diff options
author | Harmen Stoppels <me@harmenstoppels.nl> | 2023-11-15 16:49:16 +0100 |
---|---|---|
committer | GitHub <noreply@github.com> | 2023-11-15 15:49:16 +0000 |
commit | 2f24aeb7f690a7cc73996479b0028a273e91d9df (patch) | |
tree | 94b2658b1136c741d9167d3f3db83e68120749d5 | |
parent | 1d30e78b5419af674140084c5c355e376aa3f93b (diff) | |
download | spack-2f24aeb7f690a7cc73996479b0028a273e91d9df.tar.gz spack-2f24aeb7f690a7cc73996479b0028a273e91d9df.tar.bz2 spack-2f24aeb7f690a7cc73996479b0028a273e91d9df.tar.xz spack-2f24aeb7f690a7cc73996479b0028a273e91d9df.zip |
docs: packages config on separate page, demote bootstrapping (#41085)
-rw-r--r-- | lib/spack/docs/build_settings.rst | 544 | ||||
-rw-r--r-- | lib/spack/docs/build_systems/intelpackage.rst | 2 | ||||
-rw-r--r-- | lib/spack/docs/configuration.rst | 2 | ||||
-rw-r--r-- | lib/spack/docs/index.rst | 3 | ||||
-rw-r--r-- | lib/spack/docs/packages_yaml.rst | 549 |
5 files changed, 553 insertions, 547 deletions
diff --git a/lib/spack/docs/build_settings.rst b/lib/spack/docs/build_settings.rst index 38fe2fb2c0..9fa7eafcbe 100644 --- a/lib/spack/docs/build_settings.rst +++ b/lib/spack/docs/build_settings.rst @@ -99,547 +99,3 @@ while `py-numpy` still needs an older version: Up to Spack v0.20 ``duplicates:strategy:none`` was the default (and only) behavior. From Spack v0.21 the default behavior is ``duplicates:strategy:minimal``. - -.. _build-settings: - -================================ -Package Settings (packages.yaml) -================================ - -Spack allows you to customize how your software is built through the -``packages.yaml`` file. Using it, you can make Spack prefer particular -implementations of virtual dependencies (e.g., MPI or BLAS/LAPACK), -or you can make it prefer to build with particular compilers. You can -also tell Spack to use *external* software installations already -present on your system. - -At a high level, the ``packages.yaml`` file is structured like this: - -.. code-block:: yaml - - packages: - package1: - # settings for package1 - package2: - # settings for package2 - # ... - all: - # settings that apply to all packages. - -So you can either set build preferences specifically for *one* package, -or you can specify that certain settings should apply to *all* packages. -The types of settings you can customize are described in detail below. - -Spack's build defaults are in the default -``etc/spack/defaults/packages.yaml`` file. You can override them in -``~/.spack/packages.yaml`` or ``etc/spack/packages.yaml``. For more -details on how this works, see :ref:`configuration-scopes`. - -.. _sec-external-packages: - ------------------ -External Packages ------------------ - -Spack can be configured to use externally-installed -packages rather than building its own packages. This may be desirable -if machines ship with system packages, such as a customized MPI -that should be used instead of Spack building its own MPI. - -External packages are configured through the ``packages.yaml`` file. -Here's an example of an external configuration: - -.. code-block:: yaml - - packages: - openmpi: - externals: - - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64" - prefix: /opt/openmpi-1.4.3 - - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug" - prefix: /opt/openmpi-1.4.3-debug - - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" - prefix: /opt/openmpi-1.6.5-intel - -This example lists three installations of OpenMPI, one built with GCC, -one built with GCC and debug information, and another built with Intel. -If Spack is asked to build a package that uses one of these MPIs as a -dependency, it will use the pre-installed OpenMPI in -the given directory. Note that the specified path is the top-level -install prefix, not the ``bin`` subdirectory. - -``packages.yaml`` can also be used to specify modules to load instead -of the installation prefixes. The following example says that module -``CMake/3.7.2`` provides cmake version 3.7.2. - -.. code-block:: yaml - - cmake: - externals: - - spec: cmake@3.7.2 - modules: - - CMake/3.7.2 - -Each ``packages.yaml`` begins with a ``packages:`` attribute, followed -by a list of package names. To specify externals, add an ``externals:`` -attribute under the package name, which lists externals. -Each external should specify a ``spec:`` string that should be as -well-defined as reasonably possible. If a -package lacks a spec component, such as missing a compiler or -package version, then Spack will guess the missing component based -on its most-favored packages, and it may guess incorrectly. - -Each package version and compiler listed in an external should -have entries in Spack's packages and compiler configuration, even -though the package and compiler may not ever be built. - -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -Prevent packages from being built from sources -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Adding an external spec in ``packages.yaml`` allows Spack to use an external location, -but it does not prevent Spack from building packages from sources. In the above example, -Spack might choose for many valid reasons to start building and linking with the -latest version of OpenMPI rather than continue using the pre-installed OpenMPI versions. - -To prevent this, the ``packages.yaml`` configuration also allows packages -to be flagged as non-buildable. The previous example could be modified to -be: - -.. code-block:: yaml - - packages: - openmpi: - externals: - - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64" - prefix: /opt/openmpi-1.4.3 - - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug" - prefix: /opt/openmpi-1.4.3-debug - - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" - prefix: /opt/openmpi-1.6.5-intel - buildable: False - -The addition of the ``buildable`` flag tells Spack that it should never build -its own version of OpenMPI from sources, and it will instead always rely on a pre-built -OpenMPI. - -.. note:: - - If ``concretizer:reuse`` is on (see :ref:`concretizer-options` for more information on that flag) - pre-built specs include specs already available from a local store, an upstream store, a registered - buildcache or specs marked as externals in ``packages.yaml``. If ``concretizer:reuse`` is off, only - external specs in ``packages.yaml`` are included in the list of pre-built specs. - -If an external module is specified as not buildable, then Spack will load the -external module into the build environment which can be used for linking. - -The ``buildable`` does not need to be paired with external packages. -It could also be used alone to forbid packages that may be -buggy or otherwise undesirable. - -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -Non-buildable virtual packages -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Virtual packages in Spack can also be specified as not buildable, and -external implementations can be provided. In the example above, -OpenMPI is configured as not buildable, but Spack will often prefer -other MPI implementations over the externally available OpenMPI. Spack -can be configured with every MPI provider not buildable individually, -but more conveniently: - -.. code-block:: yaml - - packages: - mpi: - buildable: False - openmpi: - externals: - - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64" - prefix: /opt/openmpi-1.4.3 - - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug" - prefix: /opt/openmpi-1.4.3-debug - - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" - prefix: /opt/openmpi-1.6.5-intel - -Spack can then use any of the listed external implementations of MPI -to satisfy a dependency, and will choose depending on the compiler and -architecture. - -In cases where the concretizer is configured to reuse specs, and other ``mpi`` providers -(available via stores or buildcaches) are not wanted, Spack can be configured to require -specs matching only the available externals: - -.. code-block:: yaml - - packages: - mpi: - buildable: False - require: - - one_of: [ - "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64", - "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug", - "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" - ] - openmpi: - externals: - - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64" - prefix: /opt/openmpi-1.4.3 - - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug" - prefix: /opt/openmpi-1.4.3-debug - - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" - prefix: /opt/openmpi-1.6.5-intel - -This configuration prevents any spec using MPI and originating from stores or buildcaches to be reused, -unless it matches the requirements under ``packages:mpi:require``. For more information on requirements see -:ref:`package-requirements`. - -.. _cmd-spack-external-find: - -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -Automatically Find External Packages -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -You can run the :ref:`spack external find <spack-external-find>` command -to search for system-provided packages and add them to ``packages.yaml``. -After running this command your ``packages.yaml`` may include new entries: - -.. code-block:: yaml - - packages: - cmake: - externals: - - spec: cmake@3.17.2 - prefix: /usr - -Generally this is useful for detecting a small set of commonly-used packages; -for now this is generally limited to finding build-only dependencies. -Specific limitations include: - -* Packages are not discoverable by default: For a package to be - discoverable with ``spack external find``, it needs to add special - logic. See :ref:`here <make-package-findable>` for more details. -* The logic does not search through module files, it can only detect - packages with executables defined in ``PATH``; you can help Spack locate - externals which use module files by loading any associated modules for - packages that you want Spack to know about before running - ``spack external find``. -* Spack does not overwrite existing entries in the package configuration: - If there is an external defined for a spec at any configuration scope, - then Spack will not add a new external entry (``spack config blame packages`` - can help locate all external entries). - -.. _package-requirements: - --------------------- -Package Requirements --------------------- - -Spack can be configured to always use certain compilers, package -versions, and variants during concretization through package -requirements. - -Package requirements are useful when you find yourself repeatedly -specifying the same constraints on the command line, and wish that -Spack respects these constraints whether you mention them explicitly -or not. Another use case is specifying constraints that should apply -to all root specs in an environment, without having to repeat the -constraint everywhere. - -Apart from that, requirements config is more flexible than constraints -on the command line, because it can specify constraints on packages -*when they occur* as a dependency. In contrast, on the command line it -is not possible to specify constraints on dependencies while also keeping -those dependencies optional. - -^^^^^^^^^^^^^^^^^^^ -Requirements syntax -^^^^^^^^^^^^^^^^^^^ - -The package requirements configuration is specified in ``packages.yaml``, -keyed by package name and expressed using the Spec syntax. In the simplest -case you can specify attributes that you always want the package to have -by providing a single spec string to ``require``: - -.. code-block:: yaml - - packages: - libfabric: - require: "@1.13.2" - -In the above example, ``libfabric`` will always build with version 1.13.2. If you -need to compose multiple configuration scopes ``require`` accepts a list of -strings: - -.. code-block:: yaml - - packages: - libfabric: - require: - - "@1.13.2" - - "%gcc" - -In this case ``libfabric`` will always build with version 1.13.2 **and** using GCC -as a compiler. - -For more complex use cases, require accepts also a list of objects. These objects -must have either a ``any_of`` or a ``one_of`` field, containing a list of spec strings, -and they can optionally have a ``when`` and a ``message`` attribute: - -.. code-block:: yaml - - packages: - openmpi: - require: - - any_of: ["@4.1.5", "%gcc"] - message: "in this example only 4.1.5 can build with other compilers" - -``any_of`` is a list of specs. One of those specs must be satisfied -and it is also allowed for the concretized spec to match more than one. -In the above example, that means you could build ``openmpi@4.1.5%gcc``, -``openmpi@4.1.5%clang`` or ``openmpi@3.9%gcc``, but -not ``openmpi@3.9%clang``. - -If a custom message is provided, and the requirement is not satisfiable, -Spack will print the custom error message: - -.. code-block:: console - - $ spack spec openmpi@3.9%clang - ==> Error: in this example only 4.1.5 can build with other compilers - -We could express a similar requirement using the ``when`` attribute: - -.. code-block:: yaml - - packages: - openmpi: - require: - - any_of: ["%gcc"] - when: "@:4.1.4" - message: "in this example only 4.1.5 can build with other compilers" - -In the example above, if the version turns out to be 4.1.4 or less, we require the compiler to be GCC. -For readability, Spack also allows a ``spec`` key accepting a string when there is only a single -constraint: - -.. code-block:: yaml - - packages: - openmpi: - require: - - spec: "%gcc" - when: "@:4.1.4" - message: "in this example only 4.1.5 can build with other compilers" - -This code snippet and the one before it are semantically equivalent. - -Finally, instead of ``any_of`` you can use ``one_of`` which also takes a list of specs. The final -concretized spec must match one and only one of them: - -.. code-block:: yaml - - packages: - mpich: - require: - - one_of: ["+cuda", "+rocm"] - -In the example above, that means you could build ``mpich+cuda`` or ``mpich+rocm`` but not ``mpich+cuda+rocm``. - -.. note:: - - For ``any_of`` and ``one_of``, the order of specs indicates a - preference: items that appear earlier in the list are preferred - (note that these preferences can be ignored in favor of others). - -.. note:: - - When using a conditional requirement, Spack is allowed to actively avoid the triggering - condition (the ``when=...`` spec) if that leads to a concrete spec with better scores in - the optimization criteria. To check the current optimization criteria and their - priorities you can run ``spack solve zlib``. - -^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -Setting default requirements -^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -You can also set default requirements for all packages under ``all`` -like this: - -.. code-block:: yaml - - packages: - all: - require: '%clang' - -which means every spec will be required to use ``clang`` as a compiler. - -Note that in this case ``all`` represents a *default set of requirements* - -if there are specific package requirements, then the default requirements -under ``all`` are disregarded. For example, with a configuration like this: - -.. code-block:: yaml - - packages: - all: - require: '%clang' - cmake: - require: '%gcc' - -Spack requires ``cmake`` to use ``gcc`` and all other nodes (including ``cmake`` -dependencies) to use ``clang``. - -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -Setting requirements on virtual specs -^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -A requirement on a virtual spec applies whenever that virtual is present in the DAG. -This can be useful for fixing which virtual provider you want to use: - -.. code-block:: yaml - - packages: - mpi: - require: 'mvapich2 %gcc' - -With the configuration above the only allowed ``mpi`` provider is ``mvapich2 %gcc``. - -Requirements on the virtual spec and on the specific provider are both applied, if -present. For instance with a configuration like: - -.. code-block:: yaml - - packages: - mpi: - require: 'mvapich2 %gcc' - mvapich2: - require: '~cuda' - -you will use ``mvapich2~cuda %gcc`` as an ``mpi`` provider. - -.. _package-preferences: - -------------------- -Package Preferences -------------------- - -In some cases package requirements can be too strong, and package -preferences are the better option. Package preferences do not impose -constraints on packages for particular versions or variants values, -they rather only set defaults. The concretizer is free to change -them if it must, due to other constraints, and also prefers reusing -installed packages over building new ones that are a better match for -preferences. - -Most package preferences (``compilers``, ``target`` and ``providers``) -can only be set globally under the ``all`` section of ``packages.yaml``: - -.. code-block:: yaml - - packages: - all: - compiler: [gcc@12.2.0, clang@12:, oneapi@2023:] - target: [x86_64_v3] - providers: - mpi: [mvapich2, mpich, openmpi] - -These preferences override Spack's default and effectively reorder priorities -when looking for the best compiler, target or virtual package provider. Each -preference takes an ordered list of spec constraints, with earlier entries in -the list being preferred over later entries. - -In the example above all packages prefer to be compiled with ``gcc@12.2.0``, -to target the ``x86_64_v3`` microarchitecture and to use ``mvapich2`` if they -depend on ``mpi``. - -The ``variants`` and ``version`` preferences can be set under -package specific sections of the ``packages.yaml`` file: - -.. code-block:: yaml - - packages: - opencv: - variants: +debug - gperftools: - version: [2.2, 2.4, 2.3] - -In this case, the preference for ``opencv`` is to build with debug options, while -``gperftools`` prefers version 2.2 over 2.4. - -Any preference can be overwritten on the command line if explicitly requested. - -Preferences cannot overcome explicit constraints, as they only set a preferred -ordering among homogeneous attribute values. Going back to the example, if -``gperftools@2.3:`` was requested, then Spack will install version 2.4 -since the most preferred version 2.2 is prohibited by the version constraint. - -.. _package_permissions: - -------------------- -Package Permissions -------------------- - -Spack can be configured to assign permissions to the files installed -by a package. - -In the ``packages.yaml`` file under ``permissions``, the attributes -``read``, ``write``, and ``group`` control the package -permissions. These attributes can be set per-package, or for all -packages under ``all``. If permissions are set under ``all`` and for a -specific package, the package-specific settings take precedence. - -The ``read`` and ``write`` attributes take one of ``user``, ``group``, -and ``world``. - -.. code-block:: yaml - - packages: - all: - permissions: - write: group - group: spack - my_app: - permissions: - read: group - group: my_team - -The permissions settings describe the broadest level of access to -installations of the specified packages. The execute permissions of -the file are set to the same level as read permissions for those files -that are executable. The default setting for ``read`` is ``world``, -and for ``write`` is ``user``. In the example above, installations of -``my_app`` will be installed with user and group permissions but no -world permissions, and owned by the group ``my_team``. All other -packages will be installed with user and group write privileges, and -world read privileges. Those packages will be owned by the group -``spack``. - -The ``group`` attribute assigns a Unix-style group to a package. All -files installed by the package will be owned by the assigned group, -and the sticky group bit will be set on the install prefix and all -directories inside the install prefix. This will ensure that even -manually placed files within the install prefix are owned by the -assigned group. If no group is assigned, Spack will allow the OS -default behavior to go as expected. - ----------------------------- -Assigning Package Attributes ----------------------------- - -You can assign class-level attributes in the configuration: - -.. code-block:: yaml - - packages: - mpileaks: - # Override existing attributes - url: http://www.somewhereelse.com/mpileaks-1.0.tar.gz - # ... or add new ones - x: 1 - -Attributes set this way will be accessible to any method executed -in the package.py file (e.g. the ``install()`` method). Values for these -attributes may be any value parseable by yaml. - -These can only be applied to specific packages, not "all" or -virtual packages. diff --git a/lib/spack/docs/build_systems/intelpackage.rst b/lib/spack/docs/build_systems/intelpackage.rst index d64fd46971..9afe1a8b91 100644 --- a/lib/spack/docs/build_systems/intelpackage.rst +++ b/lib/spack/docs/build_systems/intelpackage.rst @@ -392,7 +392,7 @@ See section :ref:`Configuration Scopes <configuration-scopes>` for an explanation about the different files and section -:ref:`Build customization <build-settings>` +:ref:`Build customization <packages-config>` for specifics and examples for ``packages.yaml`` files. .. If your system administrator did not provide modules for pre-installed Intel diff --git a/lib/spack/docs/configuration.rst b/lib/spack/docs/configuration.rst index f60c430d22..f79f300f4c 100644 --- a/lib/spack/docs/configuration.rst +++ b/lib/spack/docs/configuration.rst @@ -17,7 +17,7 @@ case you want to skip directly to specific docs: * :ref:`config.yaml <config-yaml>` * :ref:`mirrors.yaml <mirrors>` * :ref:`modules.yaml <modules>` -* :ref:`packages.yaml <build-settings>` +* :ref:`packages.yaml <packages-config>` * :ref:`repos.yaml <repositories>` You can also add any of these as inline configuration in the YAML diff --git a/lib/spack/docs/index.rst b/lib/spack/docs/index.rst index 0dd27a2444..9b032ed313 100644 --- a/lib/spack/docs/index.rst +++ b/lib/spack/docs/index.rst @@ -70,7 +70,7 @@ or refer to the full manual below. configuration config_yaml - bootstrapping + packages_yaml build_settings environments containers @@ -78,6 +78,7 @@ or refer to the full manual below. module_file_support repositories binary_caches + bootstrapping command_index chain extensions diff --git a/lib/spack/docs/packages_yaml.rst b/lib/spack/docs/packages_yaml.rst new file mode 100644 index 0000000000..e91d22a8f3 --- /dev/null +++ b/lib/spack/docs/packages_yaml.rst @@ -0,0 +1,549 @@ +.. Copyright 2013-2023 Lawrence Livermore National Security, LLC and other + Spack Project Developers. See the top-level COPYRIGHT file for details. + + SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +.. _packages-config: + +================================ +Package Settings (packages.yaml) +================================ + +Spack allows you to customize how your software is built through the +``packages.yaml`` file. Using it, you can make Spack prefer particular +implementations of virtual dependencies (e.g., MPI or BLAS/LAPACK), +or you can make it prefer to build with particular compilers. You can +also tell Spack to use *external* software installations already +present on your system. + +At a high level, the ``packages.yaml`` file is structured like this: + +.. code-block:: yaml + + packages: + package1: + # settings for package1 + package2: + # settings for package2 + # ... + all: + # settings that apply to all packages. + +So you can either set build preferences specifically for *one* package, +or you can specify that certain settings should apply to *all* packages. +The types of settings you can customize are described in detail below. + +Spack's build defaults are in the default +``etc/spack/defaults/packages.yaml`` file. You can override them in +``~/.spack/packages.yaml`` or ``etc/spack/packages.yaml``. For more +details on how this works, see :ref:`configuration-scopes`. + +.. _sec-external-packages: + +----------------- +External Packages +----------------- + +Spack can be configured to use externally-installed +packages rather than building its own packages. This may be desirable +if machines ship with system packages, such as a customized MPI +that should be used instead of Spack building its own MPI. + +External packages are configured through the ``packages.yaml`` file. +Here's an example of an external configuration: + +.. code-block:: yaml + + packages: + openmpi: + externals: + - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64" + prefix: /opt/openmpi-1.4.3 + - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug" + prefix: /opt/openmpi-1.4.3-debug + - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" + prefix: /opt/openmpi-1.6.5-intel + +This example lists three installations of OpenMPI, one built with GCC, +one built with GCC and debug information, and another built with Intel. +If Spack is asked to build a package that uses one of these MPIs as a +dependency, it will use the pre-installed OpenMPI in +the given directory. Note that the specified path is the top-level +install prefix, not the ``bin`` subdirectory. + +``packages.yaml`` can also be used to specify modules to load instead +of the installation prefixes. The following example says that module +``CMake/3.7.2`` provides cmake version 3.7.2. + +.. code-block:: yaml + + cmake: + externals: + - spec: cmake@3.7.2 + modules: + - CMake/3.7.2 + +Each ``packages.yaml`` begins with a ``packages:`` attribute, followed +by a list of package names. To specify externals, add an ``externals:`` +attribute under the package name, which lists externals. +Each external should specify a ``spec:`` string that should be as +well-defined as reasonably possible. If a +package lacks a spec component, such as missing a compiler or +package version, then Spack will guess the missing component based +on its most-favored packages, and it may guess incorrectly. + +Each package version and compiler listed in an external should +have entries in Spack's packages and compiler configuration, even +though the package and compiler may not ever be built. + +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Prevent packages from being built from sources +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +Adding an external spec in ``packages.yaml`` allows Spack to use an external location, +but it does not prevent Spack from building packages from sources. In the above example, +Spack might choose for many valid reasons to start building and linking with the +latest version of OpenMPI rather than continue using the pre-installed OpenMPI versions. + +To prevent this, the ``packages.yaml`` configuration also allows packages +to be flagged as non-buildable. The previous example could be modified to +be: + +.. code-block:: yaml + + packages: + openmpi: + externals: + - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64" + prefix: /opt/openmpi-1.4.3 + - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug" + prefix: /opt/openmpi-1.4.3-debug + - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" + prefix: /opt/openmpi-1.6.5-intel + buildable: False + +The addition of the ``buildable`` flag tells Spack that it should never build +its own version of OpenMPI from sources, and it will instead always rely on a pre-built +OpenMPI. + +.. note:: + + If ``concretizer:reuse`` is on (see :ref:`concretizer-options` for more information on that flag) + pre-built specs include specs already available from a local store, an upstream store, a registered + buildcache or specs marked as externals in ``packages.yaml``. If ``concretizer:reuse`` is off, only + external specs in ``packages.yaml`` are included in the list of pre-built specs. + +If an external module is specified as not buildable, then Spack will load the +external module into the build environment which can be used for linking. + +The ``buildable`` does not need to be paired with external packages. +It could also be used alone to forbid packages that may be +buggy or otherwise undesirable. + +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Non-buildable virtual packages +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +Virtual packages in Spack can also be specified as not buildable, and +external implementations can be provided. In the example above, +OpenMPI is configured as not buildable, but Spack will often prefer +other MPI implementations over the externally available OpenMPI. Spack +can be configured with every MPI provider not buildable individually, +but more conveniently: + +.. code-block:: yaml + + packages: + mpi: + buildable: False + openmpi: + externals: + - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64" + prefix: /opt/openmpi-1.4.3 + - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug" + prefix: /opt/openmpi-1.4.3-debug + - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" + prefix: /opt/openmpi-1.6.5-intel + +Spack can then use any of the listed external implementations of MPI +to satisfy a dependency, and will choose depending on the compiler and +architecture. + +In cases where the concretizer is configured to reuse specs, and other ``mpi`` providers +(available via stores or buildcaches) are not wanted, Spack can be configured to require +specs matching only the available externals: + +.. code-block:: yaml + + packages: + mpi: + buildable: False + require: + - one_of: [ + "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64", + "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug", + "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" + ] + openmpi: + externals: + - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64" + prefix: /opt/openmpi-1.4.3 + - spec: "openmpi@1.4.3%gcc@4.4.7 arch=linux-debian7-x86_64+debug" + prefix: /opt/openmpi-1.4.3-debug + - spec: "openmpi@1.6.5%intel@10.1 arch=linux-debian7-x86_64" + prefix: /opt/openmpi-1.6.5-intel + +This configuration prevents any spec using MPI and originating from stores or buildcaches to be reused, +unless it matches the requirements under ``packages:mpi:require``. For more information on requirements see +:ref:`package-requirements`. + +.. _cmd-spack-external-find: + +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Automatically Find External Packages +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +You can run the :ref:`spack external find <spack-external-find>` command +to search for system-provided packages and add them to ``packages.yaml``. +After running this command your ``packages.yaml`` may include new entries: + +.. code-block:: yaml + + packages: + cmake: + externals: + - spec: cmake@3.17.2 + prefix: /usr + +Generally this is useful for detecting a small set of commonly-used packages; +for now this is generally limited to finding build-only dependencies. +Specific limitations include: + +* Packages are not discoverable by default: For a package to be + discoverable with ``spack external find``, it needs to add special + logic. See :ref:`here <make-package-findable>` for more details. +* The logic does not search through module files, it can only detect + packages with executables defined in ``PATH``; you can help Spack locate + externals which use module files by loading any associated modules for + packages that you want Spack to know about before running + ``spack external find``. +* Spack does not overwrite existing entries in the package configuration: + If there is an external defined for a spec at any configuration scope, + then Spack will not add a new external entry (``spack config blame packages`` + can help locate all external entries). + +.. _package-requirements: + +-------------------- +Package Requirements +-------------------- + +Spack can be configured to always use certain compilers, package +versions, and variants during concretization through package +requirements. + +Package requirements are useful when you find yourself repeatedly +specifying the same constraints on the command line, and wish that +Spack respects these constraints whether you mention them explicitly +or not. Another use case is specifying constraints that should apply +to all root specs in an environment, without having to repeat the +constraint everywhere. + +Apart from that, requirements config is more flexible than constraints +on the command line, because it can specify constraints on packages +*when they occur* as a dependency. In contrast, on the command line it +is not possible to specify constraints on dependencies while also keeping +those dependencies optional. + +^^^^^^^^^^^^^^^^^^^ +Requirements syntax +^^^^^^^^^^^^^^^^^^^ + +The package requirements configuration is specified in ``packages.yaml``, +keyed by package name and expressed using the Spec syntax. In the simplest +case you can specify attributes that you always want the package to have +by providing a single spec string to ``require``: + +.. code-block:: yaml + + packages: + libfabric: + require: "@1.13.2" + +In the above example, ``libfabric`` will always build with version 1.13.2. If you +need to compose multiple configuration scopes ``require`` accepts a list of +strings: + +.. code-block:: yaml + + packages: + libfabric: + require: + - "@1.13.2" + - "%gcc" + +In this case ``libfabric`` will always build with version 1.13.2 **and** using GCC +as a compiler. + +For more complex use cases, require accepts also a list of objects. These objects +must have either a ``any_of`` or a ``one_of`` field, containing a list of spec strings, +and they can optionally have a ``when`` and a ``message`` attribute: + +.. code-block:: yaml + + packages: + openmpi: + require: + - any_of: ["@4.1.5", "%gcc"] + message: "in this example only 4.1.5 can build with other compilers" + +``any_of`` is a list of specs. One of those specs must be satisfied +and it is also allowed for the concretized spec to match more than one. +In the above example, that means you could build ``openmpi@4.1.5%gcc``, +``openmpi@4.1.5%clang`` or ``openmpi@3.9%gcc``, but +not ``openmpi@3.9%clang``. + +If a custom message is provided, and the requirement is not satisfiable, +Spack will print the custom error message: + +.. code-block:: console + + $ spack spec openmpi@3.9%clang + ==> Error: in this example only 4.1.5 can build with other compilers + +We could express a similar requirement using the ``when`` attribute: + +.. code-block:: yaml + + packages: + openmpi: + require: + - any_of: ["%gcc"] + when: "@:4.1.4" + message: "in this example only 4.1.5 can build with other compilers" + +In the example above, if the version turns out to be 4.1.4 or less, we require the compiler to be GCC. +For readability, Spack also allows a ``spec`` key accepting a string when there is only a single +constraint: + +.. code-block:: yaml + + packages: + openmpi: + require: + - spec: "%gcc" + when: "@:4.1.4" + message: "in this example only 4.1.5 can build with other compilers" + +This code snippet and the one before it are semantically equivalent. + +Finally, instead of ``any_of`` you can use ``one_of`` which also takes a list of specs. The final +concretized spec must match one and only one of them: + +.. code-block:: yaml + + packages: + mpich: + require: + - one_of: ["+cuda", "+rocm"] + +In the example above, that means you could build ``mpich+cuda`` or ``mpich+rocm`` but not ``mpich+cuda+rocm``. + +.. note:: + + For ``any_of`` and ``one_of``, the order of specs indicates a + preference: items that appear earlier in the list are preferred + (note that these preferences can be ignored in favor of others). + +.. note:: + + When using a conditional requirement, Spack is allowed to actively avoid the triggering + condition (the ``when=...`` spec) if that leads to a concrete spec with better scores in + the optimization criteria. To check the current optimization criteria and their + priorities you can run ``spack solve zlib``. + +^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Setting default requirements +^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +You can also set default requirements for all packages under ``all`` +like this: + +.. code-block:: yaml + + packages: + all: + require: '%clang' + +which means every spec will be required to use ``clang`` as a compiler. + +Note that in this case ``all`` represents a *default set of requirements* - +if there are specific package requirements, then the default requirements +under ``all`` are disregarded. For example, with a configuration like this: + +.. code-block:: yaml + + packages: + all: + require: '%clang' + cmake: + require: '%gcc' + +Spack requires ``cmake`` to use ``gcc`` and all other nodes (including ``cmake`` +dependencies) to use ``clang``. + +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ +Setting requirements on virtual specs +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +A requirement on a virtual spec applies whenever that virtual is present in the DAG. +This can be useful for fixing which virtual provider you want to use: + +.. code-block:: yaml + + packages: + mpi: + require: 'mvapich2 %gcc' + +With the configuration above the only allowed ``mpi`` provider is ``mvapich2 %gcc``. + +Requirements on the virtual spec and on the specific provider are both applied, if +present. For instance with a configuration like: + +.. code-block:: yaml + + packages: + mpi: + require: 'mvapich2 %gcc' + mvapich2: + require: '~cuda' + +you will use ``mvapich2~cuda %gcc`` as an ``mpi`` provider. + +.. _package-preferences: + +------------------- +Package Preferences +------------------- + +In some cases package requirements can be too strong, and package +preferences are the better option. Package preferences do not impose +constraints on packages for particular versions or variants values, +they rather only set defaults. The concretizer is free to change +them if it must, due to other constraints, and also prefers reusing +installed packages over building new ones that are a better match for +preferences. + +Most package preferences (``compilers``, ``target`` and ``providers``) +can only be set globally under the ``all`` section of ``packages.yaml``: + +.. code-block:: yaml + + packages: + all: + compiler: [gcc@12.2.0, clang@12:, oneapi@2023:] + target: [x86_64_v3] + providers: + mpi: [mvapich2, mpich, openmpi] + +These preferences override Spack's default and effectively reorder priorities +when looking for the best compiler, target or virtual package provider. Each +preference takes an ordered list of spec constraints, with earlier entries in +the list being preferred over later entries. + +In the example above all packages prefer to be compiled with ``gcc@12.2.0``, +to target the ``x86_64_v3`` microarchitecture and to use ``mvapich2`` if they +depend on ``mpi``. + +The ``variants`` and ``version`` preferences can be set under +package specific sections of the ``packages.yaml`` file: + +.. code-block:: yaml + + packages: + opencv: + variants: +debug + gperftools: + version: [2.2, 2.4, 2.3] + +In this case, the preference for ``opencv`` is to build with debug options, while +``gperftools`` prefers version 2.2 over 2.4. + +Any preference can be overwritten on the command line if explicitly requested. + +Preferences cannot overcome explicit constraints, as they only set a preferred +ordering among homogeneous attribute values. Going back to the example, if +``gperftools@2.3:`` was requested, then Spack will install version 2.4 +since the most preferred version 2.2 is prohibited by the version constraint. + +.. _package_permissions: + +------------------- +Package Permissions +------------------- + +Spack can be configured to assign permissions to the files installed +by a package. + +In the ``packages.yaml`` file under ``permissions``, the attributes +``read``, ``write``, and ``group`` control the package +permissions. These attributes can be set per-package, or for all +packages under ``all``. If permissions are set under ``all`` and for a +specific package, the package-specific settings take precedence. + +The ``read`` and ``write`` attributes take one of ``user``, ``group``, +and ``world``. + +.. code-block:: yaml + + packages: + all: + permissions: + write: group + group: spack + my_app: + permissions: + read: group + group: my_team + +The permissions settings describe the broadest level of access to +installations of the specified packages. The execute permissions of +the file are set to the same level as read permissions for those files +that are executable. The default setting for ``read`` is ``world``, +and for ``write`` is ``user``. In the example above, installations of +``my_app`` will be installed with user and group permissions but no +world permissions, and owned by the group ``my_team``. All other +packages will be installed with user and group write privileges, and +world read privileges. Those packages will be owned by the group +``spack``. + +The ``group`` attribute assigns a Unix-style group to a package. All +files installed by the package will be owned by the assigned group, +and the sticky group bit will be set on the install prefix and all +directories inside the install prefix. This will ensure that even +manually placed files within the install prefix are owned by the +assigned group. If no group is assigned, Spack will allow the OS +default behavior to go as expected. + +---------------------------- +Assigning Package Attributes +---------------------------- + +You can assign class-level attributes in the configuration: + +.. code-block:: yaml + + packages: + mpileaks: + # Override existing attributes + url: http://www.somewhereelse.com/mpileaks-1.0.tar.gz + # ... or add new ones + x: 1 + +Attributes set this way will be accessible to any method executed +in the package.py file (e.g. the ``install()`` method). Values for these +attributes may be any value parseable by yaml. + +These can only be applied to specific packages, not "all" or +virtual packages. |