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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-07-21 14:25:18 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-07-21 14:25:18 -0500 |
| commit | 469e77068fbb93dc6d746b08a37c948f0687febc (patch) | |
| tree | 4a3321833ee33b4695c7f47b81223734431fd9f9 | |
| parent | cf884900597d3c1a3c5f0c4c0521df3b0e273765 (diff) | |
| download | spack-469e77068fbb93dc6d746b08a37c948f0687febc.tar.gz spack-469e77068fbb93dc6d746b08a37c948f0687febc.tar.bz2 spack-469e77068fbb93dc6d746b08a37c948f0687febc.tar.xz spack-469e77068fbb93dc6d746b08a37c948f0687febc.zip | |
seqprep: new package (#4850)
| -rw-r--r-- | var/spack/repos/builtin/packages/seqprep/package.py | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/seqprep/package.py b/var/spack/repos/builtin/packages/seqprep/package.py new file mode 100644 index 0000000000..728b47167b --- /dev/null +++ b/var/spack/repos/builtin/packages/seqprep/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Seqprep(MakefilePackage): + """SeqPrep is a program to merge paired end Illumina reads that are + overlapping into a single longer read.""" + + homepage = "https://github.com/jstjohn/SeqPrep" + url = "https://github.com/jstjohn/SeqPrep/archive/v1.3.2.tar.gz" + + version('1.3.2', 'b6a4f5491dfdb0ce38bf791454151468') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('SeqPrep', prefix.bin) |