py-macs2: New package (#2011)

* py-macs2: New package

* py-macs2: add py-numpy@1.6: dependency

1 files changed, 46 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-macs2/package.py b/var/spack/repos/builtin/packages/py-macs2/package.py
new file mode 100644
index 0000000000..df5b00555f
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-macs2/package.py
@@ -0,0 +1,46 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class PyMacs2(Package):
+    """MACS2 Model-based Analysis of ChIP-Seq"""
+
+    homepage = "https://github.com/taoliu/MACS"
+    url      = "https://pypi.python.org/packages/9f/99/a8ac96b357f6b0a6f559fe0f5a81bcae12b98579551620ce07c5183aee2c/MACS2-2.1.1.20160309.tar.gz"
+
+    version('2.1.1.20160309', '2008ba838f83f34f8e0fddefe2a3a0159f4a740707c68058f815b31ddad53d26')
+
+    extends('python')
+    depends_on('python@2.7:2.8')
+
+    # Most Python packages only require py-setuptools as a build dependency.
+    # However, py-macs2 requires py-setuptools during runtime as well.
+    depends_on('py-setuptools', type=nolink)
+    depends_on('py-numpy@1.6:', type=nolink)
+
+    def install(self, spec, prefix):
+        setup_py('install', '--prefix={0}'.format(prefix))