summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorGeorge Hartzell <hartzell@alerce.com>2016-09-21 04:23:03 -0700
committerTodd Gamblin <tgamblin@llnl.gov>2016-09-21 04:23:03 -0700
commit51d869493ab85d4972e2d9f35be95e1b1c48dae9 (patch)
tree2476063b7edad22bb84924296f0576587e3987ae
parentdb0baaafe358a22b5bdfcf340b65ad23f9047176 (diff)
downloadspack-51d869493ab85d4972e2d9f35be95e1b1c48dae9.tar.gz
spack-51d869493ab85d4972e2d9f35be95e1b1c48dae9.tar.bz2
spack-51d869493ab85d4972e2d9f35be95e1b1c48dae9.tar.xz
spack-51d869493ab85d4972e2d9f35be95e1b1c48dae9.zip
Add package for bedtools2 (#1572)
Add package for bedtools2, with support for v2.25.0 and v2.26.0.
-rw-r--r--var/spack/repos/builtin/packages/bedtools2/package.py43
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bedtools2/package.py b/var/spack/repos/builtin/packages/bedtools2/package.py
new file mode 100644
index 0000000000..46f3185154
--- /dev/null
+++ b/var/spack/repos/builtin/packages/bedtools2/package.py
@@ -0,0 +1,43 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Bedtools2(Package):
+ """Collectively, the bedtools utilities are a swiss-army knife of
+ tools for a wide-range of genomics analysis tasks. The most
+ widely-used tools enable genome arithmetic: that is, set theory
+ on the genome."""
+
+ homepage = "https://github.com/arq5x/bedtools2"
+ url = "https://github.com/arq5x/bedtools2/archive/v2.26.0.tar.gz"
+
+ version('2.26.0', '52227e7efa6627f0f95d7d734973233d')
+ version('2.25.0', '534fb4a7bf0d0c3f05be52a0160d8e3d')
+
+ depends_on('zlib')
+
+ def install(self, spec, prefix):
+ make("prefix=%s" % prefix, "install")