r-picante: Create new package (#8117)

* r-picante: Create new package

* Remove dependency already included in RPackage base class

1 files changed, 40 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-picante/package.py b/var/spack/repos/builtin/packages/r-picante/package.py
new file mode 100644
index 0000000000..d213bfea8e
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-picante/package.py
@@ -0,0 +1,40 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RPicante(RPackage):
+    """R tools for integrating phylogenies and ecology"""
+
+    homepage = "https://cran.r-project.org/package=picante"
+    url      = "https://cran.r-project.org/src/contrib/picante_1.6-2.tar.gz"
+    list_url = "https://cran.r-project.org/src/contrib/Archive/picante"
+
+    version('1.6-2', 'e3eba6ef254068d2cfa9e96760bcd7a3')
+    version('1.6-1', '73d86b90eceda582654e995d47236d6e')
+
+    depends_on('r-ape', type=('build', 'run'))
+    depends_on('r-nlme', type=('build', 'run'))
+    depends_on('r-vegan', type=('build', 'run'))