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authorilbiondo <61497728+ilbiondo@users.noreply.github.com>2020-04-15 16:37:25 +0200
committerGitHub <noreply@github.com>2020-04-15 16:37:25 +0200
commit4afdaa5f4b611ebf7419ec2098baa0ba4a50398f (patch)
tree86d23801bf63dedb041b2b9868029ac6632cb093
parent666bc844be759e6d289b0f62866138b6177cf18a (diff)
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IQ-TREE: added new package at v1.6.12 (#16064)
-rw-r--r--var/spack/repos/builtin/packages/iq-tree/package.py51
1 files changed, 51 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/iq-tree/package.py b/var/spack/repos/builtin/packages/iq-tree/package.py
new file mode 100644
index 0000000000..9058a66f10
--- /dev/null
+++ b/var/spack/repos/builtin/packages/iq-tree/package.py
@@ -0,0 +1,51 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+from spack import *
+
+
+class IqTree(CMakePackage):
+ """IQ-TREE Efficient software for phylogenomic inference"""
+
+ homepage = "http://www.iqtree.org"
+ git = "https://github.com/Cibiv/IQ-TREE.git"
+ url = "https://github.com/Cibiv/IQ-TREE/archive/v1.6.12.tar.gz"
+
+ version('1.6.12', sha256='9614092de7a157de82c9cc402b19cc8bfa0cb0ffc93b91817875c2b4bb46a284')
+
+ variant('openmp', default=True, description='Enable OpenMP support.')
+ variant('mpi', default=False, description='Enable MPI support.')
+
+ maintainers = ['ilbiondo']
+
+ # Depends on Eigen3 and zlib
+
+ depends_on("boost")
+ depends_on("eigen")
+ depends_on("zlib")
+ depends_on('mpi', when='+mpi')
+
+ def cmake_args(self):
+
+ # Note that one has to specify "single" to get a single
+ # threaded build. Otherwise OpenMP is assumed
+
+ spec = self.spec
+ args = []
+ iqflags = []
+
+ if '+openmp' in spec:
+ iqflags.append('omp')
+
+ if '+mpi' in spec:
+ iqflags.append('mpi')
+
+ if not iqflags:
+ iqflags.append('single')
+
+ args.append('-DIQTREE_FLAGS=' + ",".join(iqflags))
+
+ return args