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authorEric <erimar77@users.noreply.github.com>2017-12-16 20:35:48 -0600
committerChristoph Junghans <christoph.junghans@gmail.com>2017-12-16 19:35:48 -0700
commit5539c94e67323f76bb7f491356cc1ad176b59b42 (patch)
tree11ae3c570b0f578210602d5c09b4ad9cb80a9f0f
parent554d4045fad6fe1de1e735f93a829e85f91b51d4 (diff)
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PANDAseq: Create new package (#6694)
-rw-r--r--var/spack/repos/builtin/packages/pandaseq/package.py48
1 files changed, 48 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/pandaseq/package.py b/var/spack/repos/builtin/packages/pandaseq/package.py
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+++ b/var/spack/repos/builtin/packages/pandaseq/package.py
@@ -0,0 +1,48 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Pandaseq(AutotoolsPackage):
+ """PANDASEQ is a program to align Illumina reads, optionally with PCR
+ primers embedded in the sequence, and reconstruct an overlapping
+ sequence."""
+
+ homepage = "https://github.com/neufeld/pandaseq"
+ url = "https://github.com/neufeld/pandaseq/archive/v2.11.tar.gz"
+
+ version('2.11', 'a8ae0e938bac592fc07dfa668147d80b')
+ version('2.10', '5b5b04c9b693a999f10a9c9bd643f068')
+
+ depends_on('autoconf', type='build')
+ depends_on('automake', type='build')
+ depends_on('libtool', type='build')
+ depends_on('m4', type='build')
+ depends_on('zlib', type='build')
+ depends_on('pkg-config', type='build')
+
+ def autoreconf(self, spec, prefix):
+ bash = which('bash')
+ bash('./autogen.sh')