MetaSV: adding new package (#6691)

1 files changed, 39 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/metasv/package.py b/var/spack/repos/builtin/packages/metasv/package.py
new file mode 100644
index 0000000000..da513ae1b0
--- /dev/null
+++ b/var/spack/repos/builtin/packages/metasv/package.py
@@ -0,0 +1,39 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Metasv(PythonPackage):
+    """An accurate and integrative structural-variant caller
+       for next generation sequencing"""
+
+    homepage = "http://bioinform.github.io/metasv/"
+    url      = "https://github.com/bioinform/metasv/archive/0.5.4.tar.gz"
+
+    version('0.5.4', 'de2e21ac4f86bc4d1830bdfff95d8391')
+
+    depends_on('py-pybedtools@0.6.9', type=('build', 'run'))
+    depends_on('py-pysam@0.7.7', type=('build', 'run'))
+    depends_on('py-pyvcf@0.6.7', type=('build', 'run'))