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authormanifest <robqiao@users.noreply.github.com>2020-10-29 12:15:24 +1030
committerGitHub <noreply@github.com>2020-10-28 20:45:24 -0500
commitb4a0a43d980f23623101ca5bbaf34d3791d239df (patch)
treeb007272da010159dd8d1aff3b48e3cf6f4bd600c
parent3243e904a84042522d1b298ec7ddd75574eddf4b (diff)
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PopLDdecay package + (#17802)
* poplddecay bio * flake8 debug * bin PATH correction * build step opt * BUILD_PATH fix * retro implementation + style fix
-rw-r--r--var/spack/repos/builtin/packages/poplddecay/package.py28
1 files changed, 28 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/poplddecay/package.py b/var/spack/repos/builtin/packages/poplddecay/package.py
new file mode 100644
index 0000000000..6dbf55dc27
--- /dev/null
+++ b/var/spack/repos/builtin/packages/poplddecay/package.py
@@ -0,0 +1,28 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Poplddecay(MakefilePackage):
+ """
+ PopLDdecay: a fast and effective tool for linkage disequilibrium
+ decay analysis based on variant call format files
+ """
+
+ homepage = "https://github.com/BGI-shenzhen/PopLDdecay"
+ url = "https://github.com/BGI-shenzhen/PopLDdecay/archive/v3.41.tar.gz"
+
+ maintainers = ['robqiao']
+
+ version('3.41', sha256='09a1ad01581520b84ef73eaa0b199879c84e77b259ba6ff06dbca5fcfc090457')
+ version('3.40', sha256='5070930166fb90f7eaaa4b87c4430caa8a827d79c54683e2f56434a4daf69778')
+
+ build_directory = 'src'
+
+ build_targets = ['all', 'clean']
+
+ def install(self, spec, prefix):
+ install_tree('bin', prefix.bin)