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authorEric <erimar77@users.noreply.github.com>2017-12-16 20:38:36 -0600
committerChristoph Junghans <christoph.junghans@gmail.com>2017-12-16 19:38:36 -0700
commitd08dc0c019a4b860d2162135075f51686b7e9e8d (patch)
tree871fa89c00d6bb8850faaa0d55dc5804664981f2
parentd3545ed1b3c5d81e26b1b23b25bbfcc810602114 (diff)
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py-tetoolkit: Create new package (#6673)
-rw-r--r--var/spack/repos/builtin/packages/py-tetoolkit/package.py42
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-tetoolkit/package.py b/var/spack/repos/builtin/packages/py-tetoolkit/package.py
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+++ b/var/spack/repos/builtin/packages/py-tetoolkit/package.py
@@ -0,0 +1,42 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PyTetoolkit(PythonPackage):
+ """TEToolkit is a software package that utilizes both unambiguously
+ (uniquely) and ambiguously (multi-) mapped reads to perform
+ differential enrichment analyses from high throughput sequencing
+ experiments."""
+
+ homepage = "http://hammelllab.labsites.cshl.edu/software"
+ url = "https://pypi.io/packages/source/T/TEToolkit/TEToolkit-1.5.1.tar.gz"
+
+ version('1.5.1', '05745b2d5109911e95593e423446a831')
+
+ depends_on('py-setuptools')
+ depends_on('python@2.7:', type=('build', 'run'))
+ depends_on('py-pysam', type=('build', 'run'))
+ depends_on('r-deseq', type=('build', 'run'))