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| author | peetsv <32349688+peetsv@users.noreply.github.com> | 2017-12-18 19:37:09 -0800 |
|---|---|---|
| committer | scheibelp <scheibel1@llnl.gov> | 2017-12-18 19:37:09 -0800 |
| commit | f7a5a271380838641bedd0193c8578520f2efd00 (patch) | |
| tree | 752ea9cec84f6d44ff5d5fd3108d779d772959e9 | |
| parent | 01924558850ff5b54c9d22066b40eccb878c80f1 (diff) | |
| download | spack-f7a5a271380838641bedd0193c8578520f2efd00.tar.gz spack-f7a5a271380838641bedd0193c8578520f2efd00.tar.bz2 spack-f7a5a271380838641bedd0193c8578520f2efd00.tar.xz spack-f7a5a271380838641bedd0193c8578520f2efd00.zip | |
IGV: new package (#6710)
| -rw-r--r-- | var/spack/repos/builtin/packages/igv/package.py | 54 |
1 files changed, 54 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/igv/package.py b/var/spack/repos/builtin/packages/igv/package.py new file mode 100644 index 0000000000..7198024ab6 --- /dev/null +++ b/var/spack/repos/builtin/packages/igv/package.py @@ -0,0 +1,54 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import glob + + +class Igv(Package): + """The Integrative Genomics Viewer (IGV) is a high-performance + visualization tool for interactive exploration of large, + integrated genomic datasets.""" + + homepage = "http://software.broadinstitute.org/software/igv/" + + version('2.4.5', '4c45e1b281d8e3d8630aa485c5df6949', + url='http://data.broadinstitute.org/igv/projects/downloads/2.4/IGVSource_2.4.5.zip') + version('2.3.50', '7fdb903a59d556fad25e668b38e860f8', + url='http://data.broadinstitute.org/igv/projects/downloads/2.3/IGVSource_2.3.50.zip') + + depends_on('jdk@8:', type=('build', 'run'), when='@2.4:') + depends_on('jdk@7u0:7u999', type=('build', 'run'), when='@2.3:2.3.999') + depends_on('ant', type='build') + + def install(self, spec, prefix): + ant = self.spec['ant'].command + ant('all') + mkdirp(prefix.bin) + install('igv.sh', prefix.bin) + install('igv.jar', prefix.bin) + mkdirp(prefix.lib) + files = [x for x in glob.glob("lib/*jar")] + for f in files: + install(f, prefix.lib) |