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| author | Glenn Johnson <glenn-johnson@uiowa.edu> | 2022-08-25 13:50:11 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-08-25 11:50:11 -0700 |
| commit | 925a99a043866fac44a6b645c1c8f82b32edbfdf (patch) | |
| tree | 4eef68355d2a3d34e1a77a021e6eb83573cf785b | |
| parent | 883b96aeb51f2f84e467b2a49657c1f851b2ab1e (diff) | |
| download | spack-925a99a043866fac44a6b645c1c8f82b32edbfdf.tar.gz spack-925a99a043866fac44a6b645c1c8f82b32edbfdf.tar.bz2 spack-925a99a043866fac44a6b645c1c8f82b32edbfdf.tar.xz spack-925a99a043866fac44a6b645c1c8f82b32edbfdf.zip | |
new package: r-glmgampoi (#32366)
* new package: r-glmgampoi
* Remove duplicate depends_on directive
| -rw-r--r-- | var/spack/repos/builtin/packages/r-glmgampoi/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-glmgampoi/package.py b/var/spack/repos/builtin/packages/r-glmgampoi/package.py new file mode 100644 index 0000000000..13e5a507a2 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-glmgampoi/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RGlmgampoi(RPackage): + """Fit a Gamma-Poisson Generalized Linear Model. + + Fit linear models to overdispersed count data. The package can estimate + the overdispersion and fit repeated models for matrix input. It is designed + to handle large input datasets as they typically occur in single cell + RNA-seq experiments.""" + + bioc = "glmGamPoi" + + version("1.8.0", commit="b723d61e05c1ad50a3cf6a6393ec3d97adc7edb4") + + depends_on("r-rcpp", type=("build", "run")) + depends_on("r-delayedmatrixstats", type=("build", "run")) + depends_on("r-matrixstats", type=("build", "run")) + depends_on("r-delayedarray", type=("build", "run")) + depends_on("r-hdf5array", type=("build", "run")) + depends_on("r-summarizedexperiment", type=("build", "run")) + depends_on("r-biocgenerics", type=("build", "run")) + depends_on("r-rcpparmadillo", type=("build", "run")) + depends_on("r-beachmat", type=("build", "run")) |