bedops: Create new package (#7956)

* bedops: Create new package

* fix install method

1 files changed, 42 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/bedops/package.py b/var/spack/repos/builtin/packages/bedops/package.py
new file mode 100644
index 0000000000..6757d082d8
--- /dev/null
+++ b/var/spack/repos/builtin/packages/bedops/package.py
@@ -0,0 +1,42 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Bedops(MakefilePackage):
+    """BEDOPS is an open-source command-line toolkit that performs highly
+    efficient and scalable Boolean and other set operations, statistical
+    calculations, archiving, conversion and other management of genomic data of
+    arbitrary scale."""
+
+    homepage = "https://bedops.readthedocs.io"
+    url      = "https://github.com/bedops/bedops/archive/v2.4.30.tar.gz"
+
+    version('2.4.34', 'fc467d96134a0efe8b134e638af87a1a')
+    version('2.4.30', '4e5d9f7b7e5432b28aef8d17a22cffab')
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        make('install', "BINDIR=%s" % prefix.bin)