py-niworkflows: add new package (#26639)

* py-niworkflows: add new package

* Update var/spack/repos/builtin/packages/py-niworkflows/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove unnecessary comment

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

1 files changed, 63 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-niworkflows/package.py b/var/spack/repos/builtin/packages/py-niworkflows/package.py
new file mode 100644
index 0000000000..e923c77b4d
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-niworkflows/package.py
@@ -0,0 +1,63 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyNiworkflows(PythonPackage):
+    """Common workflows for MRI (anatomical, functional, diffusion, etc)"""
+
+    homepage = "https://github.com/nipreps/niworkflows"
+    pypi     = "niworkflows/niworkflows-1.4.0.tar.gz"
+
+    version('1.4.0', sha256='d4e59070fde0290e0bfeece120ff1d2ff1f9573e3f2e6a719fe463c913af25ec')
+    version('1.3.5', sha256='92e24f3462fb3ad4d8ee724506fba05da2b3ca0626850dd2e637a553e17d69b8')
+    version('1.0.4', sha256='34bfa5561e6f872dbd85bb30a1b44c5e1be525167abe3932aee8ac06d15f6ed9')
+
+    variant('fsl', default=False, description="Enable fsl support.")
+    variant('ants', default=False, description="Enable ants support.")
+
+    depends_on('python@3.7:', when='@1.3.3:', type=('build', 'run'))
+    depends_on('python@3.6:', when='@1.2:', type=('build', 'run'))
+    depends_on('python@3.5:', type=('build', 'run'))
+    depends_on('py-setuptools@38.4.1:', when='@1.2.3:', type='build')
+    depends_on('py-setuptools@30.4.0:', type='build')
+    depends_on('py-attrs', when='@1.1.4:', type=('build', 'run'))
+    depends_on('py-jinja2', type=('build', 'run'))
+    depends_on('py-matplotlib@2.2.0:', when='^python@3.6:', type=('build', 'run'))
+    depends_on('py-matplotlib@2.2.0:3.1', when='^python@:3.5', type=('build', 'run'))
+    depends_on('py-nibabel@3.0.1:', when='@1.1.6:', type=('build', 'run'))
+    depends_on('py-nibabel@2.4.1:', type=('build', 'run'))
+    depends_on('py-nilearn@0.2.6:0.4,0.5.2:', type=('build', 'run'))
+    depends_on('py-nipype@1.5.1:', when='@1.3:', type=('build', 'run'))
+    depends_on('py-nipype@1.3.1:', type=('build', 'run'))
+    depends_on('py-nitransforms@20:20.1', when='@1.2:', type=('build', 'run'))
+    depends_on('py-numpy', when='@1.3.3:', type=('build', 'run'))
+    depends_on('py-packaging', type=('build', 'run'))
+    depends_on('py-pandas', type=('build', 'run'))
+    depends_on('py-pybids@0.11.1:', when='@1.3:', type=('build', 'run'))
+    depends_on('py-pybids@0.9.4:', type=('build', 'run'))
+    depends_on('py-pyyaml', type=('build', 'run'))
+    depends_on('py-scikit-image', type=('build', 'run'))
+    depends_on('py-scikit-image@0.14.4', when='^python@:3.5', type=('build', 'run'))
+    depends_on('py-scikit-learn', when='@:1.3', type=('build', 'run'))
+    depends_on('py-scipy', type=('build', 'run'))
+    depends_on('py-seaborn', type=('build', 'run'))
+    depends_on('py-svgutils@0.3.4:', when='@1.4:', type=('build', 'run'))
+    depends_on('py-svgutils@0.3.1', when='@1.3.5', type=('build', 'run'))
+    depends_on('py-svgutils', type=('build', 'run'))
+    depends_on('py-transforms3d', type=('build', 'run'))
+    depends_on('py-templateflow@0.6:', when='@1.3:', type=('build', 'run'))
+    depends_on('py-templateflow@0.4.1:0.4', when='@:1.0', type=('build', 'run'))
+
+    with when('+fsl'):
+        depends_on('fsl@5.0.9:', type=('build', 'run'))
+    with when('+ants'):
+        depends_on('ants@2.2:', type=('build', 'run'))
+
+    # dependencies that are not yet in spack
+    # depends_on('afni@Debian-16.2.07:', type=('build', 'run'))
+    # depends_on('c3d@1:', type=('build', 'run'))
+    # depends_on('freesurfer@6.0.1:', type=('build', 'run'))