fermikit: new package (#7775)

1 files changed, 39 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/fermikit/package.py b/var/spack/repos/builtin/packages/fermikit/package.py
new file mode 100644
index 0000000000..3ad9f6689d
--- /dev/null
+++ b/var/spack/repos/builtin/packages/fermikit/package.py
@@ -0,0 +1,39 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Fermikit(MakefilePackage):
+    """De novo assembly based variant calling pipeline for Illumina short
+    reads"""
+
+    homepage = "https://github.com/lh3/fermikit"
+
+    version('2017-11-7', git='https://github.com/lh3/fermikit.git', commit='bf9c7112221577ba110665bddca8f1987250bdc7', submodules=True)
+
+    depends_on('zlib')
+
+    def install(self, spec, prefix):
+        install_tree('fermi.kit', prefix.bin)