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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-07-21 01:58:20 -0500 |
|---|---|---|
| committer | Massimiliano Culpo <massimiliano.culpo@googlemail.com> | 2017-07-21 08:58:20 +0200 |
| commit | 7afce8d8cc27747934c218eff2a389a65f98e966 (patch) | |
| tree | 6ca934977b6ec5710fc56288fd4f656c288f5e9f | |
| parent | 78762628263015a901eccbcfd0b36626adf6aa91 (diff) | |
| download | spack-7afce8d8cc27747934c218eff2a389a65f98e966.tar.gz spack-7afce8d8cc27747934c218eff2a389a65f98e966.tar.bz2 spack-7afce8d8cc27747934c218eff2a389a65f98e966.tar.xz spack-7afce8d8cc27747934c218eff2a389a65f98e966.zip | |
satsuma2: new package (#4838)
| -rw-r--r-- | var/spack/repos/builtin/packages/satsuma2/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/satsuma2/package.py b/var/spack/repos/builtin/packages/satsuma2/package.py new file mode 100644 index 0000000000..39abc714e0 --- /dev/null +++ b/var/spack/repos/builtin/packages/satsuma2/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Satsuma2(CMakePackage): + """Satsuma2 is an optimsed version of Satsuma, a tool to reliably align + large and complex DNA sequences providing maximum sensitivity (to find + all there is to find), specificity (to only find real homology) and + speed (to accomodate the billions of base pairs in vertebrate genomes). + """ + + homepage = "https://github.com/bioinfologics/satsuma2" + url = "https://github.com/bioinfologics/satsuma2" + + version('2016-11-22', git='https://github.com/bioinfologics/satsuma2.git', commit='da694aeecf352e344b790bea4a7aaa529f5b69e6') + + def install(self, spec, prefix): + install_tree(join_path('spack-build', 'bin'), prefix.bin) |