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authorYifan Zhu <ifanzhu@foxmail.com>2017-09-25 17:57:56 -0500
committerChristoph Junghans <christoph.junghans@gmail.com>2017-09-25 16:57:56 -0600
commit9b2c9bb69908db014b6dfe4fa4114fbda0302e10 (patch)
tree4b6eb9067421f0270462ffaac5fed3dad292a94d
parent34d41312847f2460cd61d1dec2fd776404ec3944 (diff)
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r-affy: created new package (#5471)
-rw-r--r--var/spack/repos/builtin/packages/r-affy/package.py44
1 files changed, 44 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-affy/package.py b/var/spack/repos/builtin/packages/r-affy/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RAffy(RPackage):
+ """The package contains functions for exploratory oligonucleotide array
+ analysis. The dependence on tkWidgets only concerns few convenience
+ functions. 'affy' is fully functional without it."""
+
+ homepage = "https://bioconductor.org/packages/affy/"
+ url = "https://bioconductor.org/packages/3.5/bioc/src/contrib/affy_1.54.0.tar.gz"
+ list_url = homepage
+
+ version('1.54.0', '84270de80ca61bb14b6127a6f5390100')
+
+ depends_on('r-biocgenerics', type=('build', 'run'))
+ depends_on('r-biobase', type=('build', 'run'))
+ depends_on('r-affyio', type=('build', 'run'))
+ depends_on('r-biocinstaller', type=('build', 'run'))
+ depends_on('r-preprocesscore', type=('build', 'run'))
+ depends_on('r-zlibbioc', type=('build', 'run'))