r-rhdf5: Create new package. (#6330)

1 files changed, 43 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-rhdf5/package.py b/var/spack/repos/builtin/packages/r-rhdf5/package.py
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+++ b/var/spack/repos/builtin/packages/r-rhdf5/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RRhdf5(RPackage):
+    """This R/Bioconductor package provides an interface between HDF5
+    and R. HDF5's main features are the ability to store and access very
+    large and/or complex datasets and a wide variety of metadata on mass
+    storage (disk) through a completely portable file format. The rhdf5
+    package is thus suited for the exchange of large and/or complex
+    datasets between R and other software package, and for letting R
+    applications work on datasets that are larger than the available RAM."""
+
+    homepage = "https://www.bioconductor.org/packages/rhdf5/"
+    url      = "https://git.bioconductor.org/packages/rhdf5"
+
+    version('2.20.0', git='https://git.bioconductor.org/packages/rhdf5', commit='37b5165325062728bbec9167f89f5f4b794f30bc')
+
+    depends_on('r@3.4.0:3.4.9', when='@2.20.0')
+    depends_on('r-zlibbioc', type=('build', 'run'))