fermi: Create new package. (#7702)

* fermi: Create new package.

* fermi: Add missing dependency.

* fermi: Change dependency type of perl to run.

1 files changed, 42 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/fermi/package.py b/var/spack/repos/builtin/packages/fermi/package.py
new file mode 100644
index 0000000000..03aea8a716
--- /dev/null
+++ b/var/spack/repos/builtin/packages/fermi/package.py
@@ -0,0 +1,42 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Fermi(MakefilePackage):
+    """A WGS de novo assembler based on the FMD-index for large genomes."""
+
+    homepage = "https://github.com/lh3/fermi"
+    url      = "https://github.com/downloads/lh3/fermi/fermi-1.1.tar.bz2"
+
+    version('1.1', 'd5f006315652b6f18070b31474ca5ebb')
+
+    depends_on('zlib')
+    depends_on('perl', type='run')
+
+    def install(self, spec, prefix):
+        mkdir(prefix.bin)
+        install('fermi', prefix.bin)
+        install('run-fermi.pl', prefix.bin)