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author | lingnanyuan <1297162327@qq.com> | 2018-04-06 15:40:58 -0500 |
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committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-04-06 15:40:58 -0500 |
commit | fa3edd4af094bd6bf6f5a56668302eef19284bb3 (patch) | |
tree | adfafe47331de2be8657d684742e75ec63112a9e | |
parent | 27b1069e0c392dbd709700e30cd51f95ae9ed84f (diff) | |
download | spack-fa3edd4af094bd6bf6f5a56668302eef19284bb3.tar.gz spack-fa3edd4af094bd6bf6f5a56668302eef19284bb3.tar.bz2 spack-fa3edd4af094bd6bf6f5a56668302eef19284bb3.tar.xz spack-fa3edd4af094bd6bf6f5a56668302eef19284bb3.zip |
hapdip: Create new package and its dependency k8. (#7685)
* k8: Create new package.
* hapdip: Create new package.
* Change description.
-rw-r--r-- | var/spack/repos/builtin/packages/hapdip/package.py | 39 | ||||
-rw-r--r-- | var/spack/repos/builtin/packages/k8/package.py | 46 |
2 files changed, 85 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/hapdip/package.py b/var/spack/repos/builtin/packages/hapdip/package.py new file mode 100644 index 0000000000..066282c461 --- /dev/null +++ b/var/spack/repos/builtin/packages/hapdip/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Hapdip(Package): + """The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from + WGS Illumina data.""" + + homepage = "https://github.com/lh3/hapdip" + + version('2018.02.20', git='https://github.com/lh3/hapdip.git', commit='7c12f684471999a543fdacce972c9c86349758a3') + + depends_on('k8', type='run') + + def install(self, spec, prefix): + install_tree('.', prefix.bin) diff --git a/var/spack/repos/builtin/packages/k8/package.py b/var/spack/repos/builtin/packages/k8/package.py new file mode 100644 index 0000000000..801323229d --- /dev/null +++ b/var/spack/repos/builtin/packages/k8/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +import sys +import os +from spack import * + + +class K8(Package): + """K8 is a Javascript shell based on Google's V8 Javascript engine.""" + + homepage = "https://github.com/attractivechaos/k8" + url = "https://github.com/attractivechaos/k8/releases/download/v0.2.4/k8-0.2.4.tar.bz2" + + version('0.2.4', 'edc5579ff18842a2a59aa92ce8bab8b4') + + depends_on('zlib', type='run') + + def install(self, spec, prefix): + if (sys.platform == 'darwin'): + os.rename('k8-Darwin', 'k8') + + if (sys.platform != 'darwin'): + os.rename('k8-Linux', 'k8') + install_tree('.', prefix.bin) |