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| author | Yuanqi Wang <21102457+plasmas@users.noreply.github.com> | 2019-12-04 00:31:00 +0800 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2019-12-03 10:31:00 -0600 |
| commit | a5d872f510aa460ac7f665332c3ef4d4db781e8b (patch) | |
| tree | 5fc790df63f6de2f80f5072183daa6b0792969a3 | |
| parent | 7e2d01b23870c843dfbce8ba0aa0880617637933 (diff) | |
| download | spack-a5d872f510aa460ac7f665332c3ef4d4db781e8b.tar.gz spack-a5d872f510aa460ac7f665332c3ef4d4db781e8b.tar.bz2 spack-a5d872f510aa460ac7f665332c3ef4d4db781e8b.tar.xz spack-a5d872f510aa460ac7f665332c3ef4d4db781e8b.zip | |
Update MrBayes to 3.2.7a and correct MPI variants (#13929)
* Update MrBayes and correct MPI variant
* Use tarballs and remove autotools dependencies
* MrBayes: remove ISA variants
| -rw-r--r-- | var/spack/repos/builtin/packages/mrbayes/package.py | 23 |
1 files changed, 10 insertions, 13 deletions
diff --git a/var/spack/repos/builtin/packages/mrbayes/package.py b/var/spack/repos/builtin/packages/mrbayes/package.py index 930bc04af9..ec02498e94 100644 --- a/var/spack/repos/builtin/packages/mrbayes/package.py +++ b/var/spack/repos/builtin/packages/mrbayes/package.py @@ -13,21 +13,18 @@ class Mrbayes(AutotoolsPackage): of model parameters.""" homepage = "http://mrbayes.sourceforge.net" - git = "https://github.com/NBISweden/MrBayes.git" + url = "https://github.com/NBISweden/MrBayes/releases/download/v3.2.7a/mrbayes-3.2.7a.tar.gz" - version('2017-11-22', commit='8a9adb11bcc538cb95d91d57568dff383f924503') + version('3.2.7a', sha256='1a4670be84e6b968d59382328294db4c8ceb73e0c19c702265deec6f2177815c') + version('3.2.7', sha256='39d9eb269969b501268d5c27f77687c6eaa2c71ccf15c724e6f330fc405f24b9') variant('mpi', default=True, description='Enable MPI parallel support') variant('beagle', default=True, description='Enable BEAGLE library for speed benefits') - variant('sse', default=True, description='Enable SSE in order to substantially speed up execution') - - depends_on('autoconf', type='build') - depends_on('automake', type='build') - depends_on('libtool', type='build') - depends_on('m4', type='build') + variant('readline', default=False, description='Enable readline library, not recommended with MPI') depends_on('libbeagle', when='+beagle') depends_on('mpi', when='+mpi') + depends_on('readline', when='+readline') def configure_args(self): args = [] @@ -35,14 +32,14 @@ class Mrbayes(AutotoolsPackage): args.append('--with-beagle=no') else: args.append('--with-beagle=%s' % self.spec['libbeagle'].prefix) - if '~sse' in self.spec: - args.append('--enable-sse=no') + if '+readline' in self.spec: + args.append('--with-readline=yes') else: - args.append('--enable-sse=yes') + args.append('--with-readline=no') if '~mpi' in self.spec: - args.append('--enable-mpi=no') + args.append('--with-mpi=no') else: - args.append('--enable-mpi=yes') + args.append('--with-mpi=yes') return args def install(self, spec, prefix): |