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| author | lingnanyuan <1297162327@qq.com> | 2017-12-06 19:29:04 -0600 |
|---|---|---|
| committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-12-06 18:29:04 -0700 |
| commit | 96c95db793a91497de9e5626f8587d22de2b257f (patch) | |
| tree | 7d3a649a91a2935b1dbeafad7c3057b43dc3cdf4 | |
| parent | 9a4dd413bbdf185bdaea27813267900ea352f4d8 (diff) | |
| download | spack-96c95db793a91497de9e5626f8587d22de2b257f.tar.gz spack-96c95db793a91497de9e5626f8587d22de2b257f.tar.bz2 spack-96c95db793a91497de9e5626f8587d22de2b257f.tar.xz spack-96c95db793a91497de9e5626f8587d22de2b257f.zip | |
r-org-hs-eg-db: Create new package. (#6581)
| -rw-r--r-- | var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py b/var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py new file mode 100644 index 0000000000..64c788396e --- /dev/null +++ b/var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class ROrgHsEgDb(RPackage): + """Genome wide annotation for Human, primarily based on mapping + using Entrez Gene identifiers.""" + + homepage = "http://www.example.co://www.bioconductor.org/packages/org.Hs.eg.db/i" + url = "https://www.bioconductor.org/packages/3.5/data/annotation/src/contrib/org.Hs.eg.db_3.4.1.tar.gz" + + version('3.4.1', '0a987ef7d6167df70e91e6f48145e41c') + + depends_on('r@3.4.0:3.4.9', when='@3.4.1') + depends_on('r-annotationdbi', type=('build', 'run')) |