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authorJustin S <3630356+codeandkey@users.noreply.github.com>2019-05-17 14:32:21 -0500
committerLevi Baber <baberlevi@gmail.com>2019-05-17 14:32:21 -0500
commit7a459857e778f0d73cdb1c208c13a9cdc6ffed59 (patch)
tree9f0a64b73989b25f58b940ab87928ebd3fc784d9
parent79a0da6098cdf5e46ac493d6e3ae49424a62f4fc (diff)
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py-pybedtools: new package at 0.6.9 (#11475)
* py-pybedtools: new package at 0.6.9 * py-pybedtools: add bedtools2 dep
-rw-r--r--var/spack/repos/builtin/packages/py-pybedtools/package.py23
1 files changed, 23 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-pybedtools/package.py b/var/spack/repos/builtin/packages/py-pybedtools/package.py
new file mode 100644
index 0000000000..a0bab2d445
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-pybedtools/package.py
@@ -0,0 +1,23 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyPybedtools(PythonPackage):
+ """Python wrapper -- and more -- for Aaron Quinlan's BEDTools"""
+
+ homepage = "http://daler.github.io/pybedtools"
+ url = "https://github.com/daler/pybedtools/archive/v0.6.9.tar.gz"
+
+ version('0.6.9', sha256='2639e80917999e76572017fd93757e8d7ceb384f0b92647ccfdd23a0d60def7c')
+
+ depends_on('bedtools2', type='run')
+ depends_on('py-cython', type=('build', 'run'))
+ depends_on('py-pysam', type=('build', 'run'))
+ depends_on('py-pandas', type=('build', 'run'))
+ depends_on('py-six', type=('build', 'run'))
+ depends_on('py-numpy', type=('build', 'run'))
+ depends_on('py-setuptools', type='build')