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| author | 健美猫 <weijianwen@gmail.com> | 2018-05-05 11:11:26 +0800 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-05-04 22:11:26 -0500 |
| commit | dfe0752807783099d9bb7c5ae7d21a9b1ed155fc (patch) | |
| tree | 4c24df82bf04a720acf7e3096d2fe9792333d2d3 | |
| parent | 4fe6d9aceea5fefd8cc9779228c3a0671fed79d5 (diff) | |
| download | spack-dfe0752807783099d9bb7c5ae7d21a9b1ed155fc.tar.gz spack-dfe0752807783099d9bb7c5ae7d21a9b1ed155fc.tar.bz2 spack-dfe0752807783099d9bb7c5ae7d21a9b1ed155fc.tar.xz spack-dfe0752807783099d9bb7c5ae7d21a9b1ed155fc.zip | |
Bump pysam to 0.14.1. (#7988)
* py-pysam requires curl.
* py-pysam conflicts with htslib@1.7.
* Bump py-pysam versions.
* Add more dependencies.
| -rw-r--r-- | var/spack/repos/builtin/packages/py-pysam/package.py | 8 |
1 files changed, 7 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/py-pysam/package.py b/var/spack/repos/builtin/packages/py-pysam/package.py index 8b98f5a4e8..945855947b 100644 --- a/var/spack/repos/builtin/packages/py-pysam/package.py +++ b/var/spack/repos/builtin/packages/py-pysam/package.py @@ -30,12 +30,18 @@ class PyPysam(PythonPackage): sets.""" homepage = "https://pypi.python.org/pypi/pysam" - url = "https://pypi.io/packages/source/p/pysam/pysam-0.11.2.2.tar.gz" + url = "https://github.com/pysam-developers/pysam/archive/v0.14.1.tar.gz" + version('0.14.1', 'ad88fa5bbcc0fdf4a936734691d9c9d1') version('0.13', 'a9b502dd1a7e6403e35e6972211688a2') version('0.11.2.2', '56230cd5f55b503845915b76c22d620a') version('0.7.7', 'eaf9f37cbccc5e2708754d045909c1a0') depends_on('py-setuptools', type='build') depends_on('py-cython@0.21:', type='build') + depends_on('curl') depends_on('bcftools') + depends_on('htslib') + depends_on('samtools') + + depends_on('htslib@:1.6', when='@:0.13') |