summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorSinan <sbulutw@gmail.com>2018-01-03 08:17:15 -0800
committerAdam J. Stewart <ajstewart426@gmail.com>2018-01-03 10:17:15 -0600
commit2f551908b8c80d60f0a3f369e94b73b4c41e9738 (patch)
tree0bb09c61e6910109c8d94cb8edcb18c4096a0aee
parent34c9f08c2cf0b091c36c65f70661557dbc03c337 (diff)
downloadspack-2f551908b8c80d60f0a3f369e94b73b4c41e9738.tar.gz
spack-2f551908b8c80d60f0a3f369e94b73b4c41e9738.tar.bz2
spack-2f551908b8c80d60f0a3f369e94b73b4c41e9738.tar.xz
spack-2f551908b8c80d60f0a3f369e94b73b4c41e9738.zip
package/r-rjags: create new package (#6804)
* package/r-rjags: create new package * fix typo fix typo * package/r-rjags small fix to pass flake8 tests * package/r-rjags: more fixes to satisfy flake8 tests
-rw-r--r--var/spack/repos/builtin/packages/r-rjags/package.py46
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-rjags/package.py b/var/spack/repos/builtin/packages/r-rjags/package.py
new file mode 100644
index 0000000000..ec56d8c3af
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-rjags/package.py
@@ -0,0 +1,46 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class RRjags(RPackage):
+ """Interface to the JAGS MCMC library.
+ Usage: $ spack load r-rjags """
+
+ homepage = "https://cran.r-project.org/web/packages/rjags/index.html"
+ url = "https://cran.r-project.org/src/contrib/rjags_4-6.tar.gz"
+
+ version('4-6', 'c26b7cc8e8ddcdb55e14cba28df39f4c')
+
+ depends_on('jags', type=('link'))
+ depends_on('r-coda', type=('build', 'run'))
+
+ def configure_args(self):
+ args = ['--with-jags-lib=%s' % self.spec['jags'].prefix.lib,
+ '--with-jags-include=%s' % self.spec['jags'].prefix.include,
+ '--with-jags-modules=%s/JAGS/modules-4'
+ % self.spec['jags'].prefix.lib]
+ return args