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author | Eric <erimar77@users.noreply.github.com> | 2018-01-05 15:08:22 -0600 |
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committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-01-05 15:08:22 -0600 |
commit | ea6ebedd0ec5dc10caba2904a1ca8baaa9ac7414 (patch) | |
tree | ab48ac58f5c366103c3ddda039e0f7defaaf7093 | |
parent | d978cfbb1aefcb61d98a65ea69463c02b21edd01 (diff) | |
download | spack-ea6ebedd0ec5dc10caba2904a1ca8baaa9ac7414.tar.gz spack-ea6ebedd0ec5dc10caba2904a1ca8baaa9ac7414.tar.bz2 spack-ea6ebedd0ec5dc10caba2904a1ca8baaa9ac7414.tar.xz spack-ea6ebedd0ec5dc10caba2904a1ca8baaa9ac7414.zip |
py-pybedtools: Create new package (#6487)
* py-pybedtools: Create new package
* py-pybedtools: add py-six requirement
* py-pybedtools: remove py-cython dependency for release version
* py-pybedtools: include minimum version of py-pysam
-rw-r--r-- | var/spack/repos/builtin/packages/py-pybedtools/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-pybedtools/package.py b/var/spack/repos/builtin/packages/py-pybedtools/package.py new file mode 100644 index 0000000000..111ba39ee0 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pybedtools/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyPybedtools(PythonPackage): + """pybedtools wraps and extends BEDTools and offers + feature-level manipulations from within Python.""" + + homepage = "http://daler.github.io/pybedtools" + url = "https://pypi.io/packages/source/p/pybedtools/pybedtools-0.7.10.tar.gz" + + version('0.7.10', 'f003c67e22c48b77f070538368ece70c') + + depends_on('py-setuptools', type='build') + depends_on('bedtools2', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-pysam@0.8.1:', type=('build', 'run')) + depends_on('py-six', type=('build', 'run')) |