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| author | Adam J. Stewart <ajstewart426@gmail.com> | 2019-12-08 09:29:51 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2019-12-08 09:29:51 -0600 |
| commit | 2266aab5c50958b2660fdf904a89e3b68c65c732 (patch) | |
| tree | f1ed91ce0f3588ee1af9ddd94853174b48f5373a | |
| parent | c72568d01b9ceda21cd86c288ac1672c58cc34ec (diff) | |
| download | spack-2266aab5c50958b2660fdf904a89e3b68c65c732.tar.gz spack-2266aab5c50958b2660fdf904a89e3b68c65c732.tar.bz2 spack-2266aab5c50958b2660fdf904a89e3b68c65c732.tar.xz spack-2266aab5c50958b2660fdf904a89e3b68c65c732.zip | |
Add new r-condop package (#14050)
| -rw-r--r-- | var/spack/repos/builtin/packages/r-condop/package.py | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-condop/package.py b/var/spack/repos/builtin/packages/r-condop/package.py new file mode 100644 index 0000000000..5bbe0ccad6 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-condop/package.py @@ -0,0 +1,32 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RCondop(RPackage): + """CONDOP: Condition-Dependent Operon Predictions. + + An implementation of the computational strategy for the comprehensive + analysis of condition-dependent operon maps in prokaryotes proposed by + Fortino et al. (2014) <doi:10.1186/1471-2105-15-145>. It uses RNA-seq + transcriptome profiles to improve prokaryotic operon map inference.""" + + homepage = "https://cloud.r-project.org/package=CONDOP" + url = "https://cloud.r-project.org/src/contrib/CONDOP_1.0.tar.gz" + list_url = "https://cloud.r-project.org/src/contrib/Archive/CONDOP" + + version('1.0', sha256='3a855880f5c6b33f949c7e6de53c8e014b4d72b7024a93878b344d3e52b5296a') + + depends_on('r-mclust', type=('build', 'run')) + depends_on('r-earth', type=('build', 'run')) + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-seqinr', type=('build', 'run')) + depends_on('r-randomforest', type=('build', 'run')) + depends_on('r-rminer', type=('build', 'run')) + depends_on('r-genomicranges', type=('build', 'run')) + depends_on('r-genomeinfodb', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-iranges', type=('build', 'run')) |