MeshToolKit package (#12870)

* Adding flecsph package

* Correcting header

* Boost version update

* Correcting Flake8 errors

* Correcting headers

* Develop preferred in FleCSI

* Removing FleCSPH branch of FleCSI

* MeshToolKit package

* formatting

* Formatting

* Correcting MSTK package

* Format

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Format

* Format

* Correcting package behavior

* Correcting format

* Corrections

* Update var/spack/repos/builtin/packages/mstk/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Multiline

1 files changed, 93 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/mstk/package.py b/var/spack/repos/builtin/packages/mstk/package.py
new file mode 100644
index 0000000000..53c3d3333b
--- /dev/null
+++ b/var/spack/repos/builtin/packages/mstk/package.py
@@ -0,0 +1,93 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Mstk(CMakePackage):
+    """MSTK is a mesh framework that allows users to represent,
+    manipulate and query unstructured 3D arbitrary topology meshes
+    in a general manner without the need to code their own data
+    structures. MSTK is a flexible framework in that it allows a
+    variety of underlying representations for the mesh while
+    maintaining a common interface. It allows users to choose from
+    different mesh representations either at initialization (implemented)
+    or during the program execution (not yet implemented) so that the
+    optimal data structures are used for the particular algorithm.
+    The interaction of users and applications with MSTK is through a
+    functional interface that acts as though the mesh always contains
+    vertices, edges, faces and regions and maintains connectivity between
+    all these entities."""
+
+    homepage = "https://github.com/MeshToolkit/MSTK"
+    git      = "https://github.com/MeshToolkit/MSTK"
+
+    maintainers = ['julienloiseau']
+
+    version('master', branch='master')
+
+    variant('parallel', default='none', description='Enable Parallel Support',
+            values=('none', 'metis', 'zoltan', 'parmetis'), multi=True)
+    variant('exodusii', default=False, description='Enable ExodusII')
+    variant('use_markers', default=True, description="Enable MSTK to use markers")
+
+    depends_on("cmake@3.8:", type='build')
+
+    # Parallel variant
+    depends_on("mpi", when='parallel=metis')
+    depends_on("mpi", when='parallel=zoltan')
+    depends_on("mpi", when='parallel=parmetis')
+    depends_on("zoltan -fortran", when='parallel=zoltan')
+    depends_on("zoltan -fortran +parmetis", when='parallel=parmetis')
+    depends_on("zoltan -fortran +parmetis", when="parallel=zoltan +exodusii")
+    depends_on("metis", when="parallel=zoltan +exodusii")
+
+    depends_on("metis", when='parallel=metis')
+    depends_on("metis", when='parallel=parmetis')
+
+    # Exodusii variant
+    # The default exodusii build with mpi support
+    # It includes netcdf which includes hdf5
+    depends_on("exodusii", when='+exodusii')
+
+    def cmake_args(self):
+        options = []
+        if '+use_markers' in self.spec:
+            options.append('-DMSTK_USE_MARKERS=ON')
+        else:
+            options.append('-DMSTK_USE_MARKERS=OFF')
+
+        # Parallel variant
+        if not self.spec.satisfies('parallel=none'):
+            # Use mpi for compilation
+            options.append('-DCMAKE_CXX_COMPILER=' + self.spec['mpi'].mpicxx)
+            options.append('-DCMAKE_C_COMPILER=' + self.spec['mpi'].mpicc)
+            options.append('-DENABLE_PARALLEL=ON')
+        else:
+            options.append('-DENABLE_PARALLEL=OFF')
+
+        if ("parmetis" in self.spec or "zoltan" in self.spec and
+            "+exodusii" in self.spec):
+            options.append("-DENABLE_METIS=ON")
+            options.append("-DENABLE_ZOLTAN=ON")
+            options.append('-DZOLTAN_NEEDS_ParMETIS=ON')
+        else:
+            if "zoltan" in self.spec:
+                options.append("-DENABLE_ZOLTAN=ON")
+            else:
+                options.append("-DENABLE_ZOLTAN=OFF")
+            if "metis" in self.spec:
+                options.append("-DENABLE_METIS=ON")
+            else:
+                options.append("-DENABLE_METIS=OFF")
+            options.append('-DZOLTAN_NEEDS_ParMETIS=OFF')
+
+        # ExodusII variant
+        if '+exodusii' in self.spec:
+            options.append('-DENABLE_ExodusII=ON')
+        else:
+            options.append('-DENABLE_ExodusII=OFF')
+
+        return options