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author健美猞猁 <weijianwen@gmail.com>2019-11-19 05:09:39 +0800
committerAdam J. Stewart <ajstewart426@gmail.com>2019-11-18 14:09:39 -0700
commite433a5dc0b8a98a13cfaee43f57787be6ead4292 (patch)
tree0336d2cfada3fe7141d5202baf5512dd7a1d494d
parente0746a2a079b2e2795b3838c2fcee083149174b5 (diff)
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py-rnacocktail: a new package. (#13761)
* py-rnacocktail: a new package. * flake8. * Add build-time dependencies.
-rw-r--r--var/spack/repos/builtin/packages/py-rnacocktail/package.py25
1 files changed, 25 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-rnacocktail/package.py b/var/spack/repos/builtin/packages/py-rnacocktail/package.py
new file mode 100644
index 0000000000..e2ef86a1f3
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-rnacocktail/package.py
@@ -0,0 +1,25 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyRnacocktail(PythonPackage):
+ """RNACocktail: A comprehensive framework
+ for accurate and efficient RNA-Seq analysis."""
+
+ homepage = "http://bioinform.github.io/rnacocktail/"
+ url = "https://github.com/bioinform/rnacocktail/archive/v0.2.2.tar.gz"
+
+ version('0.2.2', sha256='34aa0d1d7bd9d80303fe7dac5acc0519f7c1ed986397692588343d82ce45c7a5')
+
+ depends_on('python@2.7:2.8', type=('build', 'run'))
+ depends_on('py-setuptools', type='build')
+ depends_on('py-pybedtools', type=('build', 'run'))
+ depends_on('py-pysam', type=('build', 'run'))
+ # Higher version of py-pandas and py-numpy
+ # depends on python@3: which conflicts with py-rnacocktail
+ depends_on('py-pandas@:0.24.2', type=('build', 'run'))
+ depends_on('py-numpy@:1.16.5', type=('build', 'run'))