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| author | manifest <robqiao@users.noreply.github.com> | 2020-10-15 23:56:39 +1030 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-10-15 15:26:39 +0200 |
| commit | 4b9bdea26bb0ea6ee32f5b329fa87ea9d1c4540e (patch) | |
| tree | 30e44bb1eb3fc03b6eda311bf446139edb259dc1 | |
| parent | f45e8ac70bd7535d7886648ee9d327d039d970d3 (diff) | |
| download | spack-4b9bdea26bb0ea6ee32f5b329fa87ea9d1c4540e.tar.gz spack-4b9bdea26bb0ea6ee32f5b329fa87ea9d1c4540e.tar.bz2 spack-4b9bdea26bb0ea6ee32f5b329fa87ea9d1c4540e.tar.xz spack-4b9bdea26bb0ea6ee32f5b329fa87ea9d1c4540e.zip | |
blasr-libcpp: improved setup_run_environment (#18038)
Added non standard paths to LD_LIBRARY_PATH
| -rw-r--r-- | var/spack/repos/builtin/packages/blasr-libcpp/package.py | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/blasr-libcpp/package.py b/var/spack/repos/builtin/packages/blasr-libcpp/package.py index ab2491feb7..658561a39a 100644 --- a/var/spack/repos/builtin/packages/blasr-libcpp/package.py +++ b/var/spack/repos/builtin/packages/blasr-libcpp/package.py @@ -15,6 +15,8 @@ class BlasrLibcpp(Package): homepage = "https://github.com/PacificBiosciences/blasr_libcpp" url = "https://github.com/PacificBiosciences/blasr_libcpp/archive/5.3.1.tar.gz" + maintainers = ['robqiao'] + version('5.3.1', sha256='45a673255bfe7e29ed1f5bdb6410aa45cb6b907400d038c3da9daf1058b09156') depends_on('pbbam') @@ -23,7 +25,7 @@ class BlasrLibcpp(Package): # major version 1.9 and the 1.10.1 version doesn't build correctly. # https://github.com/PacificBiosciences/blasr/issues/355 - depends_on('python', type='build') + depends_on('python@2.7:2.8', type='build') phases = ['configure', 'build', 'install'] @@ -49,3 +51,11 @@ class BlasrLibcpp(Package): env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.hdf) env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.alignment) env.prepend_path('LD_LIBRARY_PATH', self.spec.prefix.pbdata) + + def setup_run_environment(self, env): + env.prepend_path('LD_LIBRARY_PATH', + self.spec['blasr-libcpp'].prefix.pbdata) + env.prepend_path('LD_LIBRARY_PATH', + self.spec['blasr-libcpp'].prefix.alignment) + env.prepend_path('LD_LIBRARY_PATH', + self.spec['blasr-libcpp'].prefix.hdf) |