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author | lingnanyuan <1297162327@qq.com> | 2017-11-17 19:57:40 -0600 |
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committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-11-17 18:57:40 -0700 |
commit | 5c06255b248322f28c5095a21365b18f3d40ed84 (patch) | |
tree | 430bc71bef37e2c1583de6e74b40506a0c4afe2f | |
parent | 1f8f593dd63699dda75c6fbfc1e56c92258b7fd0 (diff) | |
download | spack-5c06255b248322f28c5095a21365b18f3d40ed84.tar.gz spack-5c06255b248322f28c5095a21365b18f3d40ed84.tar.bz2 spack-5c06255b248322f28c5095a21365b18f3d40ed84.tar.xz spack-5c06255b248322f28c5095a21365b18f3d40ed84.zip |
r-clusterprofiler: Create new package. (#6356)
-rw-r--r-- | var/spack/repos/builtin/packages/r-clusterprofiler/package.py | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-clusterprofiler/package.py b/var/spack/repos/builtin/packages/r-clusterprofiler/package.py new file mode 100644 index 0000000000..a0e40e65e1 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-clusterprofiler/package.py @@ -0,0 +1,47 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RClusterprofiler(RPackage): + """This package implements methods to analyze and visualize functional + profiles (GO and KEGG) of gene and gene clusters.""" + + homepage = "https://www.bioconductor.org/packages/clusterProfiler/" + url = "https://git.bioconductor.org/packages/clusterProfiler" + + version('3.4.4', git='https://git.bioconductor.org/packages/clusterProfiler', commit='b86b00e8405fe130e439362651a5567736e2d9d7') + + depends_on('r@3.4.0:3.4.9', when='@3.4.4') + depends_on('r-tidyr', type=('build', 'run')) + depends_on('r-rvcheck', type=('build', 'run')) + depends_on('r-qvalue', type=('build', 'run')) + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-magrittr', type=('build', 'run')) + depends_on('r-gosemsim', type=('build', 'run')) + depends_on('r-go-db', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-dose', type=('build', 'run')) |