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authorlingnanyuan <1297162327@qq.com>2017-11-17 19:57:40 -0600
committerChristoph Junghans <christoph.junghans@gmail.com>2017-11-17 18:57:40 -0700
commit5c06255b248322f28c5095a21365b18f3d40ed84 (patch)
tree430bc71bef37e2c1583de6e74b40506a0c4afe2f
parent1f8f593dd63699dda75c6fbfc1e56c92258b7fd0 (diff)
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r-clusterprofiler: Create new package. (#6356)
-rw-r--r--var/spack/repos/builtin/packages/r-clusterprofiler/package.py47
1 files changed, 47 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-clusterprofiler/package.py b/var/spack/repos/builtin/packages/r-clusterprofiler/package.py
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+++ b/var/spack/repos/builtin/packages/r-clusterprofiler/package.py
@@ -0,0 +1,47 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RClusterprofiler(RPackage):
+ """This package implements methods to analyze and visualize functional
+ profiles (GO and KEGG) of gene and gene clusters."""
+
+ homepage = "https://www.bioconductor.org/packages/clusterProfiler/"
+ url = "https://git.bioconductor.org/packages/clusterProfiler"
+
+ version('3.4.4', git='https://git.bioconductor.org/packages/clusterProfiler', commit='b86b00e8405fe130e439362651a5567736e2d9d7')
+
+ depends_on('r@3.4.0:3.4.9', when='@3.4.4')
+ depends_on('r-tidyr', type=('build', 'run'))
+ depends_on('r-rvcheck', type=('build', 'run'))
+ depends_on('r-qvalue', type=('build', 'run'))
+ depends_on('r-plyr', type=('build', 'run'))
+ depends_on('r-magrittr', type=('build', 'run'))
+ depends_on('r-gosemsim', type=('build', 'run'))
+ depends_on('r-go-db', type=('build', 'run'))
+ depends_on('r-ggplot2', type=('build', 'run'))
+ depends_on('r-annotationdbi', type=('build', 'run'))
+ depends_on('r-dose', type=('build', 'run'))