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| author | ilbiondo <61497728+ilbiondo@users.noreply.github.com> | 2020-04-15 23:04:06 +0200 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-04-15 16:04:06 -0500 |
| commit | e41ac9af8a714c364a24f6d8446fd353c960f41c (patch) | |
| tree | 06fa6ddb3764bb21255486e4c6362ccec4c68c2c | |
| parent | fef4e80a6ddcd4ea0841a21be2b9ed857519e40f (diff) | |
| download | spack-e41ac9af8a714c364a24f6d8446fd353c960f41c.tar.gz spack-e41ac9af8a714c364a24f6d8446fd353c960f41c.tar.bz2 spack-e41ac9af8a714c364a24f6d8446fd353c960f41c.tar.xz spack-e41ac9af8a714c364a24f6d8446fd353c960f41c.zip | |
Sonlib (#16060)
* sonLib package as required by the HAL toolkit
* cleanup
* Update var/spack/repos/builtin/packages/sonlib/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/sonlib/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
| -rw-r--r-- | var/spack/repos/builtin/packages/sonlib/package.py | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/sonlib/package.py b/var/spack/repos/builtin/packages/sonlib/package.py new file mode 100644 index 0000000000..c071e8a7b0 --- /dev/null +++ b/var/spack/repos/builtin/packages/sonlib/package.py @@ -0,0 +1,47 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * +import os + + +class Sonlib(MakefilePackage): + """sonLib is a compact C/Python library for + sequence analysis in bioinformatics.""" + + # This is sonlib as needed by the hal package which expects + # a side by side compilation + # + # If you need to use sonlib then you want py-sonlib + + homepage = "https://github.com/ComparativeGenomicsToolkit" + url = "https://github.com/ComparativeGenomicsToolkit/sonLib" + git = "https://github.com/ComparativeGenomicsToolkit/sonLib.git" + + version('master', branch='master') + version('2020-04-01', commit='7ebe2ede05a6ee366d93a7a993db69a99943a68f') + + def setup_build_environment(self, env): + + binpath = os.path.join(self.stage.source_path, 'bin') + libpath = os.path.join(self.stage.source_path, 'lib') + + env.set('BINDIR', binpath) + env.set('LIBDIR', libpath) + + def build(self, spec, prefix): + + binpath = os.path.join(self.stage.source_path, 'bin') + libpath = os.path.join(self.stage.source_path, 'lib') + + mkdir(binpath) + mkdir(libpath) + + make() + + def install(self, spec, prefix): + + install_tree('bin', prefix.bin) + install_tree('lib', prefix.lib) |