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| author | t-nojiri <68096132+t-nojiri@users.noreply.github.com> | 2020-10-11 10:33:08 +0900 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-10-10 20:33:08 -0500 |
| commit | b7ed6b4fe05f8eb555bf2932c2523d2309867f22 (patch) | |
| tree | 9544842047f6869209578a26c55a1f76b797eb51 | |
| parent | 588cf7e03cd7c9da5f20e4ec3fbcd5f645a3adea (diff) | |
| download | spack-b7ed6b4fe05f8eb555bf2932c2523d2309867f22.tar.gz spack-b7ed6b4fe05f8eb555bf2932c2523d2309867f22.tar.bz2 spack-b7ed6b4fe05f8eb555bf2932c2523d2309867f22.tar.xz spack-b7ed6b4fe05f8eb555bf2932c2523d2309867f22.zip | |
jellyfish@1.1.11: Change the type of the array dna_codes to the signed type. (#19019)
* jellyfish@1.1.11: Change the type of the array dna_codes to the signed type.
* jellyfish@1.1.11: Add patch file
| -rw-r--r-- | var/spack/repos/builtin/packages/jellyfish/dna_codes.patch | 22 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/jellyfish/package.py | 2 |
2 files changed, 24 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/jellyfish/dna_codes.patch b/var/spack/repos/builtin/packages/jellyfish/dna_codes.patch new file mode 100644 index 0000000000..59bcce3e93 --- /dev/null +++ b/var/spack/repos/builtin/packages/jellyfish/dna_codes.patch @@ -0,0 +1,22 @@ +--- spack-src/jellyfish/dna_codes.hpp.bak 2013-05-30 04:45:57.000000000 +0900 ++++ spack-src/jellyfish/dna_codes.hpp 2020-09-28 10:37:14.580832234 +0900 +@@ -14,7 +14,7 @@ + static const uint_t CODE_IGNORE = (uint_t)-2; + static const uint_t CODE_COMMENT = (uint_t)-3; + static const uint_t CODE_NOT_DNA = ((uint_t)1) << (bsizeof(uint_t) - 1); +-extern const char dna_codes[256]; ++extern const signed char dna_codes[256]; + }; + + #endif /* __DNA_CODE_HPP__ */ +--- spack-src/jellyfish/dna_codes.cc.bak 2013-05-30 04:45:57.000000000 +0900 ++++ spack-src/jellyfish/dna_codes.cc 2020-09-28 10:29:08.810848835 +0900 +@@ -7,7 +7,7 @@ + #define C 1 + #define G 2 + #define T 3 +-const char jellyfish::dna_codes[256] = { ++const signed char jellyfish::dna_codes[256] = { + O, O, O, O, O, O, O, O, O, O, I, O, O, O, O, O, + O, O, O, O, O, O, O, O, O, O, O, O, O, O, O, O, + O, O, O, O, O, O, O, O, O, O, O, O, O, R, O, O, diff --git a/var/spack/repos/builtin/packages/jellyfish/package.py b/var/spack/repos/builtin/packages/jellyfish/package.py index 67092a81ad..1d5b7febc1 100644 --- a/var/spack/repos/builtin/packages/jellyfish/package.py +++ b/var/spack/repos/builtin/packages/jellyfish/package.py @@ -20,3 +20,5 @@ class Jellyfish(AutotoolsPackage): depends_on('perl', type=('build', 'run')) depends_on('python', type=('build', 'run')) + + patch('dna_codes.patch', when='@1.1.11') |