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| author | Tomoyasu Nojiri <68096132+t-nojiri@users.noreply.github.com> | 2021-01-20 00:01:16 +0900 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-01-19 09:01:16 -0600 |
| commit | ab83b6689e25b9b86059f63b4046871d59d3694b (patch) | |
| tree | 1126575112b4b9eec6da076a89a89d56ff7c94ab | |
| parent | 89b9d07efaa7349e8e75f074bb818fd1e08ba422 (diff) | |
| download | spack-ab83b6689e25b9b86059f63b4046871d59d3694b.tar.gz spack-ab83b6689e25b9b86059f63b4046871d59d3694b.tar.bz2 spack-ab83b6689e25b9b86059f63b4046871d59d3694b.tar.xz spack-ab83b6689e25b9b86059f63b4046871d59d3694b.zip | |
sortmerna: Fix for aarch64 (#21126)
| -rw-r--r-- | var/spack/repos/builtin/packages/sortmerna/for_aarch64.patch | 22 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/sortmerna/package.py | 7 |
2 files changed, 27 insertions, 2 deletions
diff --git a/var/spack/repos/builtin/packages/sortmerna/for_aarch64.patch b/var/spack/repos/builtin/packages/sortmerna/for_aarch64.patch new file mode 100644 index 0000000000..a1a279a1de --- /dev/null +++ b/var/spack/repos/builtin/packages/sortmerna/for_aarch64.patch @@ -0,0 +1,22 @@ +--- spack-src/src/sortmerna/ssw.c.bak 2021-01-15 15:52:23.000000000 +0900 ++++ spack-src/src/sortmerna/ssw.c 2021-01-15 16:20:53.863003152 +0900 +@@ -42,7 +42,7 @@ + * July 10, 2013 + */ + +-#include <emmintrin.h> ++#include <sse2neon.h> + #include <stdint.h> + #include <stdlib.h> + #include <stdio.h> +--- spack-src/include/ssw.h.bak 2021-01-15 15:52:22.000000000 +0900 ++++ spack-src/include/ssw.h 2021-01-15 16:16:51.383025096 +0900 +@@ -21,7 +21,7 @@ + #include <stdio.h> + #include <stdint.h> + #include <string.h> +-#include <emmintrin.h> ++#include <sse2neon.h> + + extern const char map_nt[122]; + /*! @typedef structure of the query profile */ diff --git a/var/spack/repos/builtin/packages/sortmerna/package.py b/var/spack/repos/builtin/packages/sortmerna/package.py index 45c7bf33fc..a5537da9b2 100644 --- a/var/spack/repos/builtin/packages/sortmerna/package.py +++ b/var/spack/repos/builtin/packages/sortmerna/package.py @@ -16,10 +16,13 @@ class Sortmerna(CMakePackage): version('2017-07-13', commit='8bde6fa113a5d99a23ae81b48eeea6760e966094') depends_on('zlib') + depends_on('sse2neon', when='target=aarch64:') + + patch('for_aarch64.patch', when='target=aarch64:') def install(self, spec, prefix): mkdirp(prefix.bin) - with working_dir(join_path('spack-build', 'src', 'indexdb')): + with working_dir(join_path(self.build_directory, 'src', 'indexdb')): install('indexdb', prefix.bin) - with working_dir(join_path('spack-build', 'src', 'sortmerna')): + with working_dir(join_path(self.build_directory, 'src', 'sortmerna')): install('sortmerna', prefix.bin) |