diff options
| author | Yifan Zhu <ifanzhu@foxmail.com> | 2018-02-14 02:42:40 -0600 |
|---|---|---|
| committer | Massimiliano Culpo <massimiliano.culpo@gmail.com> | 2018-02-14 09:42:40 +0100 |
| commit | f36e83fa5fd64c1425b6b5b074571193f024d77e (patch) | |
| tree | 0e9b5974e8ff2b9b47b6cd70ccd72eb5e6cf7ea1 | |
| parent | 24beadbdd2e5e222f7a9c32c02fdc46059e8ac77 (diff) | |
| download | spack-f36e83fa5fd64c1425b6b5b074571193f024d77e.tar.gz spack-f36e83fa5fd64c1425b6b5b074571193f024d77e.tar.bz2 spack-f36e83fa5fd64c1425b6b5b074571193f024d77e.tar.xz spack-f36e83fa5fd64c1425b6b5b074571193f024d77e.zip | |
r-seqlogo: new package (#7229)
| -rw-r--r-- | var/spack/repos/builtin/packages/r-seqlogo/package.py | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-seqlogo/package.py b/var/spack/repos/builtin/packages/r-seqlogo/package.py new file mode 100644 index 0000000000..c6c77361ee --- /dev/null +++ b/var/spack/repos/builtin/packages/r-seqlogo/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RSeqlogo(RPackage): + """seqLogo takes the position weight matrix of a DNA sequence motif and + plots the corresponding sequence logo as introduced by Schneider and + Stephens (1990).""" + + homepage = "https://bioconductor.org/packages/seqLogo/" + url = "https://git.bioconductor.org/packages/seqLogo" + + version('1.44.0', git='https://git.bioconductor.org/packages/seqLogo', commit='4cac14ff29f413d6de1a9944eb5d21bfe5045fac') + + depends_on('r@3.4.3:3.4.9', when='@1.44.0') |