CEED 1.0 (#7423)

* ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc

Very preliminary, a lot of ad hoc decisions, fragile, missing functionality
All packages do build on my MacOS laptop with Cuda

Funded-by: ECP
Project: CEED
Time: 4 hours
Reported-by: Tzanio Kolev <kolev1@llnl.gov>

* Some adjustments in a few CEED-related packages.

This is still very preliminary, but with these changes I'm able to build from
scratch on a Mac laptop and a Linux desktop (RHEL7).

Note that there doesn't seem to be a good way to support CUDA in Spack, so
you'll have to install that manually yourself. You will also need a Fortran
compiler, in particular on a Mac where you also have to make sure that it
is being picked up in ~/.spack/darwin/compilers.yaml.

* ceed bundle package including OCCA, MAGMA, Nek5000, mfem, and PETSc

Very preliminary, a lot of ad hoc decisions, fragile, missing functionality
All packages do build on my MacOS laptop with Cuda

Funded-by: ECP
Project: CEED
Time: 4 hours
Reported-by: Tzanio Kolev <kolev1@llnl.gov>

* Reverting Mac-related CUDA checks in the OCCA and MAGMA packages.

A much better solution is to install CUDA manually and add it to
~/.spack/darwin/packages.yaml:

packages:
    cuda:
        paths:
            cuda@8.0.54: /usr/local/cuda

* Fix flake8 warnings

Funded-by: CEED
Project: CEED/Spack

* remove unneeded commented out code

Funded-by: CEED
Project: CEED/Spack

* Don't have PETSc use MUMPS to speedup install time, try parallel installs for Magma

Funded-by: CEED
Project: CEED/Spack

* Added libceed package and made changes to get the ceed metapackage up and running.

* Get the ceed package up and running and added installing the .h file in the libceed package.

* All packages are now pointed at specific versions (either tagged or git hashed.

* Changed some of the specific versions in the CEED metapackage.

* Some version updates.

* Applied Cameron Smith's patch for the latest pumi.

* Merge

* Nek5000: Use tarball instead of git tag

* Major update of the mfem package - needs more testing. Add a testing
shell script for mfem, test_builds.sh, in the mfem directory. It builds
a number of mfem configurations to ensure they all work.

Add 'suite-sparse' variant to petsc.

Add 'develop' version of libceed.

Add 'metis' variant of laghos.

Update the dependencies of ceed.

* Changes in petsc's handling of zlib to make the latest build work on Mac.

* [MFEM] When using '+libunwind', mfem needs '-ldl'.

* [OCCA] Remove debug print statements.

* [PETSc] Replace the check ('zlib' in spec) with ('+zlib' in spec) - the
latter checks if 'zlib' variant of petsc is enabled which is incorrect;
the former checks if petsc is configured to depend on 'zlib'.

* [MFEM] Add conduit variant.

* [libCEED] Enable testing using 'make prove'.

* [MFEM] Tweak test_builds.sh - all builds pass on fedora 27.

* Add a post install test

* Add a post installation check for NekCEM

* pumi: bump git hash, remove unused patch

* Fixed testing of Laghos package

* Adding variants in CEED package

* Empty file for URL didn't work on LLNL/LC. Replacing with bundle-package.txt -> README.md.

* [MFEM] If the spec defines the 'cxxflags' compiler flags, use that value
to set the CXXFLAGS value in the mfem build system.

* Disabling HDF5 by default.

You can still build it with "spack install ceed+hdf5".

* libceed: fix use of prefix versus DESTDIR

* Added cuda variant for libCEED (off by default)

* [libCEED] When building v0.1, fix ceed.pc before installing it.

* [CEED] Add variants for OCCA and PUMI. Replace the hdf5 variant with
a variant called quickbuild that disables variants in packages to
speedup the build - currently hdf5, boost, and superlu-dist in PETSc.

* [libCEED] Remove unused 'import os'.

* [MAGMA] Add version 2.3.0.

* [OCCA] Major update of occa/package.py.

* [libCEED] Several improvements.

* [CEED] Use fixed versions for occa and libceed.

* [OCCA] Fix a bug in CUDA setup.

* NekCEM doesn't need depends_on('python')

* [OCCA,libCEED,MFEM,CEED] Update occa and libceed versions plus a few
tweaks in occa and mfem.

* Switching to gslib-1.0.2 to fix summitdev bug.

* [Nek5000] Use the Fortran 77 compiler instead of the 'fc' compiler.
Propagate any 'fflags' and 'cflags' specifications to the Nek tools.

* [MFEM] Tweak for 'ppc64le'.

* attempt to override fips compatibility error for md5

* Compiler option changes in libCEED to fix summitdev build.

* Disable the nekcem install test until it can be fixed.

* [NekCEM] Major update of the package to fix various issues.

* [NekCEM] Fix formatting

* zoltan: remove non-portable -g0 flag

the pgi compiler does not accept it

* pumi: specify dependency on cmake > 3

* [Nek5000] Add dependency on libx11 when needed. Various hacks to
support IBM XL compilers.

* [NekCEM] Link with the pthreads library - it is required.

* [MAGMA] Add a patch for magma v2.3.0 when building with gcc <= 4.8.
Add dependency on BLAS.

* [CEED] Update to magma 2.3.0. When building with gcc < 4.9 constrain
the used suite-sparse version to <= 5.1.0 - starting with v5.2.0,
suite-sparse requires gcc >= 4.9.

* Small updates

* [libceed, gslib] Fix style

* [Nek5000] Need 'libxt' as a dependency as well.

* [MUMPS] Temporary workaround for ray.

* Updating occa and libceed to laters pre-1.0.0 and pre-0.2 hashes

* petsc: add pkg-config patch for variable quoting

Variable definitions in pkg-config are processed more like make than a
shell, so don't need quoting.  Older versions of pkg-config (<= 0.28)
did not remove the quotes when printing the value.

Freedesktop #67904 (https://bugs.freedesktop.org/show_bug.cgi?id=67904)

Reported-by: Tzanio Kolev <kolev1@llnl.gov>

* petsc: add 3.8.4 and myself as co-maintainer

* Updating libceed to latest pre-0.2 hash.

* [PETSc] Add the 'headers' and 'libs' properties.

* [MFEM] Explicitly add rpaths to link flags for external packages.
This is necessary when MFEM's exported options (in config.mk) are
used outside of Spack for linking against MFEM.

* Unset MFEM_DIR before building MFEM

* [PETSc] As observed by @jedbrown, there is no need to define the 'libs'
property explicitly - the default handler works fine too.

* Build MAGMA shared by default, install a few additional headers

* Forgot a self

* Switching to OCCA tag v1.0.0-alpha.4.

Adding urls for OCCA and libCEED ('spack uninstall' complains otherwise).

* Removed FIXMEs for OCCA tag

* [occa] Cleaned up tagged versions

* [libceed] Updated occa to v1.0.0-alpha.5

* [ceed] Updated occa to v1.0.0-alpha.5

* [libCEED] Always define the 'NDEBUG' makefile option based on the
'debug' variant setting - this should always work regardless of the
default setting inside the libceed makefile.

* [MUMPS] Revert a temporary workaround.

* [CEED, libCEED] Minor tweaks.

* libCEED v0.2 release

* [CEED] Use version 0.2 of libCEED.

* [HPGMG] Remove duplicate version.

* [CEED] Update the hpgmg version

* hpgmg: use tarball for 0.3

The Git repository contains somewhat heavy documentation so the tarballs
are much faster.

* hpgmg: +fe was default for the 0.3 release

* hpgmg: explicitly name build directory to avoid use of ambient PETSC_ARCH

* [HPGMG] Fix flake8 formatting

* libceed@0.2: work around occaFree issue

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