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authorMassimiliano Culpo <massimiliano.culpo@gmail.com>2023-04-03 21:05:19 +0200
committerGitHub <noreply@github.com>2023-04-03 21:05:19 +0200
commitf91968cf6fac592787f004420cf6c12164c3e66e (patch)
tree418d745c90358ab1920e0d75ec484ee726628c89 /lib/spack/docs/containers.rst
parent3d149a7db2d780d48d48fc86c6c43d2490235532 (diff)
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Improve Dockerfile recipe generation (#35187)
- Update default image to Ubuntu 22.04 (previously was still Ubuntu 18.04) - Optionally use depfiles to install the environment within the container - Allow extending Dockerfile Jinja2 template - Allow extending Singularity definition file Jinja2 template - Deprecate previous options to add extra instructions
Diffstat (limited to 'lib/spack/docs/containers.rst')
-rw-r--r--lib/spack/docs/containers.rst126
1 files changed, 118 insertions, 8 deletions
diff --git a/lib/spack/docs/containers.rst b/lib/spack/docs/containers.rst
index a919db0642..2c097d366c 100644
--- a/lib/spack/docs/containers.rst
+++ b/lib/spack/docs/containers.rst
@@ -444,6 +444,120 @@ attribute:
The minimum version of Singularity required to build a SIF (Singularity Image Format)
image from the recipes generated by Spack is ``3.5.3``.
+------------------------------
+Extending the Jinja2 Templates
+------------------------------
+
+The Dockerfile and the Singularity definition file that Spack can generate are based on
+a few Jinja2 templates that are rendered according to the environment being containerized.
+Even though Spack allows a great deal of customization by just setting appropriate values for
+the configuration options, sometimes that is not enough.
+
+In those cases, a user can directly extend the template that Spack uses to render the image
+to e.g. set additional environment variables or perform specific operations either before or
+after a given stage of the build. Let's consider as an example the following structure:
+
+.. code-block:: console
+
+ $ tree /opt/environment
+ /opt/environment
+ ├── data
+ │ └── data.csv
+ ├── spack.yaml
+ ├── data
+ └── templates
+ └── container
+ └── CustomDockerfile
+
+containing both the custom template extension and the environment manifest file. To use a custom
+template, the environment must register the directory containing it, and declare its use under the
+``container`` configuration:
+
+.. code-block:: yaml
+ :emphasize-lines: 7-8,12
+
+ spack:
+ specs:
+ - hdf5~mpi
+ concretizer:
+ unify: true
+ config:
+ template_dirs:
+ - /opt/environment/templates
+ container:
+ format: docker
+ depfile: true
+ template: container/CustomDockerfile
+
+The template extension can override two blocks, named ``build_stage`` and ``final_stage``, similarly to
+the example below:
+
+.. code-block::
+ :emphasize-lines: 3,8
+
+ {% extends "container/Dockerfile" %}
+ {% block build_stage %}
+ RUN echo "Start building"
+ {{ super() }}
+ {% endblock %}
+ {% block final_stage %}
+ {{ super() }}
+ COPY data /share/myapp/data
+ {% endblock %}
+
+The recipe that gets generated contains the two extra instruction that we added in our template extension:
+
+.. code-block:: Dockerfile
+ :emphasize-lines: 4,43
+
+ # Build stage with Spack pre-installed and ready to be used
+ FROM spack/ubuntu-jammy:latest as builder
+
+ RUN echo "Start building"
+
+ # What we want to install and how we want to install it
+ # is specified in a manifest file (spack.yaml)
+ RUN mkdir /opt/spack-environment \
+ && (echo "spack:" \
+ && echo " specs:" \
+ && echo " - hdf5~mpi" \
+ && echo " concretizer:" \
+ && echo " unify: true" \
+ && echo " config:" \
+ && echo " template_dirs:" \
+ && echo " - /tmp/environment/templates" \
+ && echo " install_tree: /opt/software" \
+ && echo " view: /opt/view") > /opt/spack-environment/spack.yaml
+
+ # Install the software, remove unnecessary deps
+ RUN cd /opt/spack-environment && spack env activate . && spack concretize && spack env depfile -o Makefile && make -j $(nproc) && spack gc -y
+
+ # Strip all the binaries
+ RUN find -L /opt/view/* -type f -exec readlink -f '{}' \; | \
+ xargs file -i | \
+ grep 'charset=binary' | \
+ grep 'x-executable\|x-archive\|x-sharedlib' | \
+ awk -F: '{print $1}' | xargs strip -s
+
+ # Modifications to the environment that are necessary to run
+ RUN cd /opt/spack-environment && \
+ spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
+
+ # Bare OS image to run the installed executables
+ FROM ubuntu:22.04
+
+ COPY --from=builder /opt/spack-environment /opt/spack-environment
+ COPY --from=builder /opt/software /opt/software
+ COPY --from=builder /opt/._view /opt/._view
+ COPY --from=builder /opt/view /opt/view
+ COPY --from=builder /etc/profile.d/z10_spack_environment.sh /etc/profile.d/z10_spack_environment.sh
+
+ COPY data /share/myapp/data
+
+ ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c", "$*", "--" ]
+ CMD [ "/bin/bash" ]
+
+
.. _container_config_options:
-----------------------
@@ -464,6 +578,10 @@ to customize the generation of container recipes:
- The format of the recipe
- ``docker`` or ``singularity``
- Yes
+ * - ``depfile``
+ - Whether to use a depfile for installation, or not
+ - True or False (default)
+ - No
* - ``images:os``
- Operating system used as a base for the image
- See :ref:`containers-supported-os`
@@ -512,14 +630,6 @@ to customize the generation of container recipes:
- System packages needed at run-time
- Valid packages for the current OS
- No
- * - ``extra_instructions:build``
- - Extra instructions (e.g. `RUN`, `COPY`, etc.) at the end of the ``build`` stage
- - Anything understood by the current ``format``
- - No
- * - ``extra_instructions:final``
- - Extra instructions (e.g. `RUN`, `COPY`, etc.) at the end of the ``final`` stage
- - Anything understood by the current ``format``
- - No
* - ``labels``
- Labels to tag the image
- Pairs of key-value strings