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authorHarmen Stoppels <harmenstoppels@gmail.com>2021-10-12 09:05:11 +0200
committerGitHub <noreply@github.com>2021-10-12 00:05:11 -0700
commit0c0831861c57b747d915731ef3ad214346a9dcbe (patch)
tree9fc03780ccfdcc1d743b7fb38b4c650aee0fee47 /lib/spack/external
parent580a20c2436110f6b10ae3a62242c7b01f24b9a9 (diff)
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Avoid quadratic complexity in log parser (#26568)
TL;DR: there are matching groups trying to match 1 or more occurrences of something. We don't use the matching group. Therefore it's sufficient to test for 1 occurrence. This reduce quadratic complexity to linear time. --- When parsing logs of an mpich build, I'm getting a 4 minute (!!) wait with 16 threads for regexes to run: ``` In [1]: %time p.parse("mpich.log") Wall time: 4min 14s ``` That's really unacceptably slow... After some digging, it seems a few regexes tend to have `O(n^2)` scaling where `n` is the string / log line length. I don't think they *necessarily* should scale like that, but it seems that way. The common pattern is this ``` ([^:]+): error ``` which matches `: error` literally, and then one or more non-colons before that. So for a log line like this: ``` abcdefghijklmnopqrstuvwxyz: error etc etc ``` Any of these are potential group matches when using `search` in Python: ``` abcdefghijklmnopqrstuvwxyz bcdefghijklmnopqrstuvwxyz cdefghijklmnopqrstuvwxyz ⋮ yz z ``` but clearly the capture group should return the longest match. My hypothesis is that Python has a very bad implementation of `search` that somehow considers all of these, even though it can be implemented in linear time by scanning for `: error` first, and then greedily expanding the longest possible `[^:]+` match to the left. If Python indeed considers all possible matches, then with `n` matches of length `1 .. n` you see the `O(n^2)` slowness (i verified this by replacing + with {1,k} and doubling `k`, it doubles the execution time indeed). This PR fixes this by removing the `+`, so effectively changing the O(n^2) into a O(n) worst case. The reason we are fine with dropping `+` is that we don't use the capture group anywhere, so, we just ensure `:: error` is not a match but `x: error` is. After going from O(n^2) to O(n), the 15MB mpich build log is parsed in `1.288s`, so about 200x faster. Just to be sure I've also updated `^CMake Error.*:` to `^CMake Error`, so that it does not match with all the possible `:`'s in the line. Another option is to use `.*?` there to make it quit scanning as soon as possible, but what line that starts with `CMake Error` that does not have a colon is really a false positive...
Diffstat (limited to 'lib/spack/external')
-rw-r--r--lib/spack/external/ctest_log_parser.py83
1 files changed, 21 insertions, 62 deletions
diff --git a/lib/spack/external/ctest_log_parser.py b/lib/spack/external/ctest_log_parser.py
index 4e80a2b688..61cc6df029 100644
--- a/lib/spack/external/ctest_log_parser.py
+++ b/lib/spack/external/ctest_log_parser.py
@@ -77,47 +77,7 @@ from contextlib import contextmanager
from six import StringIO
from six import string_types
-class prefilter(object):
- """Make regular expressions faster with a simple prefiltering predicate.
-
- Some regular expressions seem to be much more costly than others. In
- most cases, we can evaluate a simple precondition, e.g.::
-
- lambda x: "error" in x
-
- to avoid evaluating expensive regexes on all lines in a file. This
- can reduce parse time for large files by orders of magnitude when
- evaluating lots of expressions.
-
- A ``prefilter`` object is designed to act like a regex,, but
- ``search`` and ``match`` check the precondition before bothering to
- evaluate the regular expression.
-
- Note that ``match`` and ``search`` just return ``True`` and ``False``
- at the moment. Make them return a ``MatchObject`` or ``None`` if it
- becomes necessary.
- """
- def __init__(self, precondition, *patterns):
- self.patterns = [re.compile(p) for p in patterns]
- self.pre = precondition
- self.pattern = "\n ".join(
- ('MERGED:',) + patterns)
-
- def search(self, text):
- return self.pre(text) and any(p.search(text) for p in self.patterns)
-
- def match(self, text):
- return self.pre(text) and any(p.match(text) for p in self.patterns)
-
-
_error_matches = [
- prefilter(
- lambda x: any(s in x for s in (
- 'Error:', 'error', 'undefined reference', 'multiply defined')),
- "([^:]+): error[ \\t]*[0-9]+[ \\t]*:",
- "([^:]+): (Error:|error|undefined reference|multiply defined)",
- "([^ :]+) ?: (error|fatal error|catastrophic error)",
- "([^:]+)\\(([^\\)]+)\\) ?: (error|fatal error|catastrophic error)"),
"^FAIL: ",
"^FATAL: ",
"^failed ",
@@ -127,6 +87,8 @@ _error_matches = [
"^[Ss]egmentation [Vv]iolation",
"^[Ss]egmentation [Ff]ault",
":.*[Pp]ermission [Dd]enied",
+ "[^ :]:[0-9]+: [^ \\t]",
+ "[^:]: error[ \\t]*[0-9]+[ \\t]*:",
"^Error ([0-9]+):",
"^Fatal",
"^[Ee]rror: ",
@@ -136,6 +98,9 @@ _error_matches = [
"^cc[^C]*CC: ERROR File = ([^,]+), Line = ([0-9]+)",
"^ld([^:])*:([ \\t])*ERROR([^:])*:",
"^ild:([ \\t])*\\(undefined symbol\\)",
+ "[^ :] : (error|fatal error|catastrophic error)",
+ "[^:]: (Error:|error|undefined reference|multiply defined)",
+ "[^:]\\([^\\)]+\\) ?: (error|fatal error|catastrophic error)",
"^fatal error C[0-9]+:",
": syntax error ",
"^collect2: ld returned 1 exit status",
@@ -144,7 +109,7 @@ _error_matches = [
"^Unresolved:",
"Undefined symbol",
"^Undefined[ \\t]+first referenced",
- "^CMake Error.*:",
+ "^CMake Error",
":[ \\t]cannot find",
":[ \\t]can't find",
": \\*\\*\\* No rule to make target [`'].*\\'. Stop",
@@ -180,6 +145,7 @@ _error_exceptions = [
"instantiated from ",
"candidates are:",
": warning",
+ ": WARNING",
": \\(Warning\\)",
": note",
" ok",
@@ -187,38 +153,32 @@ _error_exceptions = [
"makefile:",
"Makefile:",
":[ \\t]+Where:",
- "([^ :]+):([0-9]+): Warning",
+ "[^ :]:[0-9]+: Warning",
"------ Build started: .* ------",
]
#: Regexes to match file/line numbers in error/warning messages
_warning_matches = [
- prefilter(
- lambda x: 'warning' in x,
- "([^ :]+):([0-9]+): warning:",
- "([^:]+): warning ([0-9]+):",
- "([^:]+): warning[ \\t]*[0-9]+[ \\t]*:",
- "([^ :]+) : warning",
- "([^:]+): warning"),
- prefilter(
- lambda x: 'note:' in x,
- "^([^ :]+):([0-9]+): note:"),
- prefilter(
- lambda x: any(s in x for s in ('Warning', 'Warnung')),
- "^(Warning|Warnung) ([0-9]+):",
- "^(Warning|Warnung)[ :]",
- "^cxx: Warning:",
- "([^ :]+):([0-9]+): (Warning|Warnung)",
- "^CMake Warning.*:"),
- "file: .* has no symbols",
+ "[^ :]:[0-9]+: warning:",
+ "[^ :]:[0-9]+: note:",
"^cc[^C]*CC: WARNING File = ([^,]+), Line = ([0-9]+)",
"^ld([^:])*:([ \\t])*WARNING([^:])*:",
+ "[^:]: warning [0-9]+:",
"^\"[^\"]+\", line [0-9]+: [Ww](arning|arnung)",
+ "[^:]: warning[ \\t]*[0-9]+[ \\t]*:",
+ "^(Warning|Warnung) ([0-9]+):",
+ "^(Warning|Warnung)[ :]",
"WARNING: ",
+ "[^ :] : warning",
+ "[^:]: warning",
"\", line [0-9]+\\.[0-9]+: [0-9]+-[0-9]+ \\([WI]\\)",
+ "^cxx: Warning:",
+ "file: .* has no symbols",
+ "[^ :]:[0-9]+: (Warning|Warnung)",
"\\([0-9]*\\): remark #[0-9]*",
"\".*\", line [0-9]+: remark\\([0-9]*\\):",
"cc-[0-9]* CC: REMARK File = .*, Line = [0-9]*",
+ "^CMake Warning",
"^\\[WARNING\\]",
]
@@ -349,8 +309,7 @@ def _profile_match(matches, exceptions, line, match_times, exc_times):
def _parse(lines, offset, profile):
def compile(regex_array):
- return [regex if isinstance(regex, prefilter) else re.compile(regex)
- for regex in regex_array]
+ return [re.compile(regex) for regex in regex_array]
error_matches = compile(_error_matches)
error_exceptions = compile(_error_exceptions)