xsdk version 0.2.0 (#3928)

* xSDK: a bundle/meta package that simple installs a series of packages with suitable specs

This is based on struggles with previous attempts at such a bundler
Funded-by: IDEAS
Project: IDEAS/xSDK
Time: 12 hours

* PETSc needs c++11 when built with Trilinos

* Added alquimia package

* remove direct setting of cpp in petsc/package.py since it doesn't work on some systems.

Funded-by: IDEAS
Project: IDEAS/xSDK
Time: .3 hours
Reported-by: Mark A. Berrill <berrillma@ornl.gov>

* provide the MPI compilers to PETSc configure with --with-cc etc instead of --with-mpi-dir

Funded-by: IDEAS
Project: IDEAS/xSDK

* Spack bug fix issue #3144

String could contain /n which resulting in spack generating warning message to stderr on each
use of compiler which configure interpreted as failing compiler

Thanks-to: Mark A. Berrill <berrillma@ornl.gov>

* Fixed alquimia package

Alquimia expects PETSC_DIR and PETSC_ARCH to be defined, and
refuses to install if they are not.  Spack does not define PETSC_
ARCH, so Alquimia will not install.  This patch does two things
to fix the alquimia build:

1. A patch has been added to remove the dependency on PETSC_ARCH.

2. Alquimia currently depends on old versions of PETSc and pflotran.
   @ghammond86 updated the alquimia interfaces to use more recent
   versions, but his patch is still sitting in an alquimia pull
   request.  As a result, the spack installer now uses his fork
   of alquimia.  This is a temporary fix until his pull request is
   accepted.

* Need to pass to Alquimia the MPI compilers, not the raw compilers

Otherwise the PETSc tests do not produce executables that can run because they are not
linked against MPI libraries

Funded-by: IDEAS
Project:  IDEAS/xSDK
Time: .5 hours

* Add alquimia to xSDK build

Funded-by: IDEAS
Project: IDEAS/xSDK

* Fix flake8 errors for xsdk packages

* Add xsdk support for xsdk version xsdk-0.2.0

Note that currently it is just dummy code, but will eventually use
a xsdk-0.2.0 tag for each package it installs.

Funded-by: IDEAS
Project:  IDEAS/xSDK
Time: .7 hours

* Do not build Mumps by default for PETSc since it is not portable, for example to Cray

Allow alquimia to accept PETSc even if the PETSc test executable cannot run since this is a problem on Cray.

Reported-by: Alicia Marie Klinvex <amklinv@sandia.gov>

* Add xsdk-0.2.0-rc1 tag for xsdk-0.2.0 installs

* Switch alquimia download site back to standard location

since they have incorporated Glenn Hammond's fixes
Also it no longer needs the patch to the Alquimia cmake

Funded-by: IDEAS
Project: IDEAS/xSDK
Reported-by: Sergi Molins Rafa <smolins@lbl.gov>

* update hypre to use the latest release candidate for xsdk 0.2.0

Funded-by: IDEAS
Project: IDEAS/xSDK
Reported-by: Ulrike Meier Yang <yang11@llnl.gov>

* Re-added patch to alquimia

The patch was out of date and has been updated accordingly.

* Added Tpetra-free option to Trilinos

The Tpetra stack takes forever to build and is not used by any of the
IDEAS teams, so there should be an option to disable it.  I have added
this option and updated the xSDK accordingly.  I also disabled
xSDKTrilinos in the xSDK, since none of the apps teams currently use it,
and it's largely Tpetra-based.

* Removed alquimia patch from develop version

The patch has been incorporated into alquimia and is no longer
necessary for the develop version.  The tagged version has not
been updated accordingly and still needs the patch for now.
(When the tagged version gets updated, the patch does need to be
removed from spack altogether, or it will break the build.)

* Removed patch from alquimia

It has been incorporated into alquimia, both the develop and
rc2 tagged versions.  The 0.2.0 version of alquimia has been updated
to tag rc2 rather than rc1.

* update xsdk-0.2.0 to depend on PETSc xsdk-0.2.0-rc2 which fixes for Apple xcode 8.3

Commit-type: bug-fix
Funded-by: IDEAS
Project: IDEAS/xSDK

* import sys got lost in merge with develop

* Update xsdk packages to use xsdk-0.2.0 tag

Commit-type: feature
Funded-by: IDEAS
Project: ECP

* Fixes for Flake8

note, had to ignore some long lines due to a single string

* simple improvements to XDK packages as suggested by Spack pull request reviewers

Commit-type: style-fix
Funded-by: IDEAS
Project: xSDK

* Removed unneeded : after develop as requested by Denis Davydov in pull request review

Commit-type: style-fix
Funded-by: IDEAS
Project: xSDK
Thanks-to: Denis Davydov

* Removed change that may not be needed due to updates in PETSc spack file such as using mpicc etc directly

Commit-type: bug-fix
Funded-by: IDEAS
Project: xSDK
Thanks-to: Adam J. Stewart

* Do not turn on xSDKTrilinos for xSDK builds since it requires tpetra

Commit-type: bug-fix
Funded-by: IDEAS
Project: xSDK

* comment why MUMPS is disabled by default for PETSc so that others won't try to enable it when modifying petsc package next time

Commit-type: documentation
Funded-by: IDEAS
Project: xSDK
Thanks-to: Denis Davydov

0 files changed, 0 insertions, 0 deletions