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authorGeorge Hartzell <hartzell@alerce.com>2017-10-18 23:59:25 -0700
committerMassimiliano Culpo <massimiliano.culpo@googlemail.com>2017-10-19 08:59:25 +0200
commitb46f1e3605ed2e2491c563f391145054442cb024 (patch)
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bcl2fastq needs `with working_dir:` after changes in #5776 (#5803)
#5776 cleaned up the way the the current working directory is managed (less magic state). bcl2fastq is packaged like a russian doll, rather than an archive file that contains the source, there's a zip file that contains a tar.gz file that contains the source. The package definition has a bit of extra code that unpacks the inner tarball. That extra bit of code now needs to explicitly arrange to be in the correct directory before it does its work.
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