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| author | Carlos Bederián <zzzoom@gmail.com> | 2017-10-12 13:08:31 -0300 |
|---|---|---|
| committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-10-12 10:08:31 -0600 |
| commit | db149876a42ec4cc8db9e488d90d71c7d811a7a6 (patch) | |
| tree | f380e368c50f266fa1f2125f2a30db5783e7c750 /var/spack/repos/builtin/packages/bcftools | |
| parent | 87c65fafa989b27381bc78addf8e375730217e8a (diff) | |
| download | spack-db149876a42ec4cc8db9e488d90d71c7d811a7a6.tar.gz spack-db149876a42ec4cc8db9e488d90d71c7d811a7a6.tar.bz2 spack-db149876a42ec4cc8db9e488d90d71c7d811a7a6.tar.xz spack-db149876a42ec4cc8db9e488d90d71c7d811a7a6.zip | |
samtools: add version 1.6 + some fixes (#5715)
* htslib: add version 1.6
* samtools: add version 1.6, remove zlib dependency
* bcftools: add version 1.6, switch to using standalone htslib
Diffstat (limited to 'var/spack/repos/builtin/packages/bcftools')
| -rw-r--r-- | var/spack/repos/builtin/packages/bcftools/package.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/var/spack/repos/builtin/packages/bcftools/package.py b/var/spack/repos/builtin/packages/bcftools/package.py index 2add3e781a..cbc33b1004 100644 --- a/var/spack/repos/builtin/packages/bcftools/package.py +++ b/var/spack/repos/builtin/packages/bcftools/package.py @@ -34,13 +34,13 @@ class Bcftools(Package): homepage = "http://samtools.github.io/bcftools/" url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2" + version('1.6', 'c4dba1e8cb55db0f94b4c47724b4f9fa') version('1.4', '50ccf0a073bd70e99cdb3c8be830416e') version('1.3.1', '575001e9fca37cab0c7a7287ad4b1cdb') - depends_on('zlib') - depends_on('bzip2', when="@1.4:") - # build fails without xz - depends_on('xz', when="@1.4") + depends_on('htslib@1.6', when='@1.6') + depends_on('htslib@1.4', when='@1.4') + depends_on('htslib@1.3.1', when='@1.3.1') def install(self, spec, prefix): make("prefix=%s" % prefix, "all") |