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authorTodd Gamblin <tgamblin@llnl.gov>2022-07-30 15:19:18 -0700
committerTodd Gamblin <tgamblin@llnl.gov>2022-07-31 13:29:20 -0700
commitf52f6e99dbf1131886a80112b8c79dfc414afb7c (patch)
tree05cb7d64b2395922f2f24683da49f472075be12c /var/spack/repos/builtin/packages/r-biocneighbors/package.py
parent549ba1ed32372c67fc57271cde3797d58b7dec6e (diff)
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Diffstat (limited to 'var/spack/repos/builtin/packages/r-biocneighbors/package.py')
-rw-r--r--var/spack/repos/builtin/packages/r-biocneighbors/package.py48
1 files changed, 24 insertions, 24 deletions
diff --git a/var/spack/repos/builtin/packages/r-biocneighbors/package.py b/var/spack/repos/builtin/packages/r-biocneighbors/package.py
index 890455d5d3..1ce09e75bf 100644
--- a/var/spack/repos/builtin/packages/r-biocneighbors/package.py
+++ b/var/spack/repos/builtin/packages/r-biocneighbors/package.py
@@ -9,30 +9,30 @@ from spack.package import *
class RBiocneighbors(RPackage):
"""Nearest Neighbor Detection for Bioconductor Packages.
- Implements exact and approximate methods for nearest neighbor detection,
- in a framework that allows them to be easily switched within
- Bioconductor packages or workflows. Exact searches can be performed
- using the k-means for k-nearest neighbors algorithm or with vantage
- point trees. Approximate searches can be performed using the Annoy or
- HNSW libraries. Searching on either Euclidean or Manhattan distances is
- supported. Parallelization is achieved for all methods by using
- BiocParallel. Functions are also provided to search for all neighbors
- within a given distance."""
+ Implements exact and approximate methods for nearest neighbor detection,
+ in a framework that allows them to be easily switched within
+ Bioconductor packages or workflows. Exact searches can be performed
+ using the k-means for k-nearest neighbors algorithm or with vantage
+ point trees. Approximate searches can be performed using the Annoy or
+ HNSW libraries. Searching on either Euclidean or Manhattan distances is
+ supported. Parallelization is achieved for all methods by using
+ BiocParallel. Functions are also provided to search for all neighbors
+ within a given distance."""
bioc = "BiocNeighbors"
- version('1.14.0', commit='670a1bd4d82636d28fbff50cea2157e16bb1a858')
- version('1.12.0', commit='3c8a290f75adc944b408e6e77a36f3a0c1509c4c')
- version('1.8.2', commit='889bc91f8cb45d210b47ae5c0b9cfb86fb071ca2')
- version('1.2.0', commit='f754c6300f835142536a4594ddf750481e0fe273')
- version('1.0.0', commit='e252fc04b6d22097f2c5f74406e77d85e7060770')
-
- depends_on('r@3.5:', type=('build', 'run'), when='@1.0.0')
- depends_on('r-rcpp', type=('build', 'run'))
- depends_on('r-s4vectors', type=('build', 'run'))
- depends_on('r-biocparallel', type=('build', 'run'))
- depends_on('r-matrix', type=('build', 'run'), when='@1.8.2:')
- depends_on('r-rcpphnsw', type=('build', 'run'), when='@1.2.0:')
-
- depends_on('r-rcppannoy', type=('build', 'run'), when='@:1.2.0')
- depends_on('r-biocgenerics', type=('build', 'run'), when='@1.2.0')
+ version("1.14.0", commit="670a1bd4d82636d28fbff50cea2157e16bb1a858")
+ version("1.12.0", commit="3c8a290f75adc944b408e6e77a36f3a0c1509c4c")
+ version("1.8.2", commit="889bc91f8cb45d210b47ae5c0b9cfb86fb071ca2")
+ version("1.2.0", commit="f754c6300f835142536a4594ddf750481e0fe273")
+ version("1.0.0", commit="e252fc04b6d22097f2c5f74406e77d85e7060770")
+
+ depends_on("r@3.5:", type=("build", "run"), when="@1.0.0")
+ depends_on("r-rcpp", type=("build", "run"))
+ depends_on("r-s4vectors", type=("build", "run"))
+ depends_on("r-biocparallel", type=("build", "run"))
+ depends_on("r-matrix", type=("build", "run"), when="@1.8.2:")
+ depends_on("r-rcpphnsw", type=("build", "run"), when="@1.2.0:")
+
+ depends_on("r-rcppannoy", type=("build", "run"), when="@:1.2.0")
+ depends_on("r-biocgenerics", type=("build", "run"), when="@1.2.0")