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| author | Glenn Johnson <glenn-johnson@uiowa.edu> | 2021-02-09 15:35:30 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-02-09 15:35:30 -0600 |
| commit | f7a9fbc688c8d59d0e89ef4c7fa874a960d15815 (patch) | |
| tree | 7c481062f21813d5d05cebf1ebb4ba6b2b290dc9 /var/spack/repos/builtin/packages/r-deseq2/package.py | |
| parent | e341a76543fa0efb327c0cec26e94446cc14ecf2 (diff) | |
| download | spack-f7a9fbc688c8d59d0e89ef4c7fa874a960d15815.tar.gz spack-f7a9fbc688c8d59d0e89ef4c7fa874a960d15815.tar.bz2 spack-f7a9fbc688c8d59d0e89ef4c7fa874a960d15815.tar.xz spack-f7a9fbc688c8d59d0e89ef4c7fa874a960d15815.zip | |
Update the Spack R BioConductor packages to Bioconductor-3.12 (#21575)
Diffstat (limited to 'var/spack/repos/builtin/packages/r-deseq2/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-deseq2/package.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/r-deseq2/package.py b/var/spack/repos/builtin/packages/r-deseq2/package.py index 55d71a51f1..a547f1cd9c 100644 --- a/var/spack/repos/builtin/packages/r-deseq2/package.py +++ b/var/spack/repos/builtin/packages/r-deseq2/package.py @@ -8,7 +8,7 @@ from spack import * class RDeseq2(RPackage): """Differential gene expression analysis based on the negative binomial - distribution. + distribution Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model @@ -17,6 +17,7 @@ class RDeseq2(RPackage): homepage = "https://bioconductor.org/packages/DESeq2" git = "https://git.bioconductor.org/packages/DESeq2.git" + version('1.30.0', commit='f4b47b208ee26ab23fe65c345f907fcfe70b3f77') version('1.24.0', commit='3ce7fbbebac526b726a6f85178063d02eb0314bf') version('1.22.2', commit='3c6a89b61add635d6d468c7fa00192314f8ca4ce') version('1.20.0', commit='7e88ea5c5e68473824ce0af6e10f19e22374cb7c') @@ -24,6 +25,7 @@ class RDeseq2(RPackage): version('1.16.1', commit='f41d9df2de25fb57054480e50bc208447a6d82fb') depends_on('r-s4vectors@0.9.25:', type=('build', 'run')) + depends_on('r-s4vectors@0.23.18:', when='@1.30.0:', type=('build', 'run')) depends_on('r-iranges', type=('build', 'run')) depends_on('r-genomicranges', type=('build', 'run')) depends_on('r-summarizedexperiment@1.1.6:', type=('build', 'run')) |