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author | Todd Gamblin <tgamblin@llnl.gov> | 2022-07-30 15:19:18 -0700 |
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committer | Todd Gamblin <tgamblin@llnl.gov> | 2022-07-31 13:29:20 -0700 |
commit | f52f6e99dbf1131886a80112b8c79dfc414afb7c (patch) | |
tree | 05cb7d64b2395922f2f24683da49f472075be12c /var/spack/repos/builtin/packages/r-sseq/package.py | |
parent | 549ba1ed32372c67fc57271cde3797d58b7dec6e (diff) | |
download | spack-f52f6e99dbf1131886a80112b8c79dfc414afb7c.tar.gz spack-f52f6e99dbf1131886a80112b8c79dfc414afb7c.tar.bz2 spack-f52f6e99dbf1131886a80112b8c79dfc414afb7c.tar.xz spack-f52f6e99dbf1131886a80112b8c79dfc414afb7c.zip |
black: reformat entire repository with black
Diffstat (limited to 'var/spack/repos/builtin/packages/r-sseq/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/r-sseq/package.py | 44 |
1 files changed, 22 insertions, 22 deletions
diff --git a/var/spack/repos/builtin/packages/r-sseq/package.py b/var/spack/repos/builtin/packages/r-sseq/package.py index 438a1665f6..2fa6962015 100644 --- a/var/spack/repos/builtin/packages/r-sseq/package.py +++ b/var/spack/repos/builtin/packages/r-sseq/package.py @@ -8,30 +8,30 @@ from spack.package import * class RSseq(RPackage): """Shrinkage estimation of dispersion in Negative Binomial models for RNA- - seq experiments with small sample size. + seq experiments with small sample size. - The purpose of this package is to discover the genes that are - differentially expressed between two conditions in RNA-seq experiments. - Gene expression is measured in counts of transcripts and modeled with - the Negative Binomial (NB) distribution using a shrinkage approach for - dispersion estimation. The method of moment (MM) estimates for - dispersion are shrunk towards an estimated target, which minimizes the - average squared difference between the shrinkage estimates and the - initial estimates. The exact per-gene probability under the NB model is - calculated, and used to test the hypothesis that the expected expression - of a gene in two conditions identically follow a NB distribution.""" + The purpose of this package is to discover the genes that are + differentially expressed between two conditions in RNA-seq experiments. + Gene expression is measured in counts of transcripts and modeled with + the Negative Binomial (NB) distribution using a shrinkage approach for + dispersion estimation. The method of moment (MM) estimates for + dispersion are shrunk towards an estimated target, which minimizes the + average squared difference between the shrinkage estimates and the + initial estimates. The exact per-gene probability under the NB model is + calculated, and used to test the hypothesis that the expected expression + of a gene in two conditions identically follow a NB distribution.""" bioc = "sSeq" - version('1.34.0', commit='882bea1664f55d85550a7185cbd4a0108c35df36') - version('1.32.0', commit='c0d3c305755d888f64d334a4ab5fa54c623054cf') - version('1.28.0', commit='401f6805628bdf6579cc0e643b7ed54319f024be') - version('1.22.0', commit='fa3895c9578edddca17b5d13a2678ee5830b85cc') - version('1.20.1', commit='91f31440323612cb04beb44404ab0a1bcb3ad87d') - version('1.18.0', commit='1f65e5a55ce0d51672b785450031872e6db5ca0f') - version('1.16.0', commit='b7f2b99dbd4a12ee9d18b0ec9898f13f1038479e') - version('1.14.0', commit='20ccffeb60196914975aa1feef902ddba659c571') + version("1.34.0", commit="882bea1664f55d85550a7185cbd4a0108c35df36") + version("1.32.0", commit="c0d3c305755d888f64d334a4ab5fa54c623054cf") + version("1.28.0", commit="401f6805628bdf6579cc0e643b7ed54319f024be") + version("1.22.0", commit="fa3895c9578edddca17b5d13a2678ee5830b85cc") + version("1.20.1", commit="91f31440323612cb04beb44404ab0a1bcb3ad87d") + version("1.18.0", commit="1f65e5a55ce0d51672b785450031872e6db5ca0f") + version("1.16.0", commit="b7f2b99dbd4a12ee9d18b0ec9898f13f1038479e") + version("1.14.0", commit="20ccffeb60196914975aa1feef902ddba659c571") - depends_on('r@3.0:', type=('build', 'run')) - depends_on('r-catools', type=('build', 'run')) - depends_on('r-rcolorbrewer', type=('build', 'run')) + depends_on("r@3.0:", type=("build", "run")) + depends_on("r-catools", type=("build", "run")) + depends_on("r-rcolorbrewer", type=("build", "run")) |