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authorTodd Gamblin <tgamblin@llnl.gov>2022-07-30 15:19:18 -0700
committerTodd Gamblin <tgamblin@llnl.gov>2022-07-31 13:29:20 -0700
commitf52f6e99dbf1131886a80112b8c79dfc414afb7c (patch)
tree05cb7d64b2395922f2f24683da49f472075be12c /var/spack/repos/builtin/packages/r-sseq/package.py
parent549ba1ed32372c67fc57271cde3797d58b7dec6e (diff)
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Diffstat (limited to 'var/spack/repos/builtin/packages/r-sseq/package.py')
-rw-r--r--var/spack/repos/builtin/packages/r-sseq/package.py44
1 files changed, 22 insertions, 22 deletions
diff --git a/var/spack/repos/builtin/packages/r-sseq/package.py b/var/spack/repos/builtin/packages/r-sseq/package.py
index 438a1665f6..2fa6962015 100644
--- a/var/spack/repos/builtin/packages/r-sseq/package.py
+++ b/var/spack/repos/builtin/packages/r-sseq/package.py
@@ -8,30 +8,30 @@ from spack.package import *
class RSseq(RPackage):
"""Shrinkage estimation of dispersion in Negative Binomial models for RNA-
- seq experiments with small sample size.
+ seq experiments with small sample size.
- The purpose of this package is to discover the genes that are
- differentially expressed between two conditions in RNA-seq experiments.
- Gene expression is measured in counts of transcripts and modeled with
- the Negative Binomial (NB) distribution using a shrinkage approach for
- dispersion estimation. The method of moment (MM) estimates for
- dispersion are shrunk towards an estimated target, which minimizes the
- average squared difference between the shrinkage estimates and the
- initial estimates. The exact per-gene probability under the NB model is
- calculated, and used to test the hypothesis that the expected expression
- of a gene in two conditions identically follow a NB distribution."""
+ The purpose of this package is to discover the genes that are
+ differentially expressed between two conditions in RNA-seq experiments.
+ Gene expression is measured in counts of transcripts and modeled with
+ the Negative Binomial (NB) distribution using a shrinkage approach for
+ dispersion estimation. The method of moment (MM) estimates for
+ dispersion are shrunk towards an estimated target, which minimizes the
+ average squared difference between the shrinkage estimates and the
+ initial estimates. The exact per-gene probability under the NB model is
+ calculated, and used to test the hypothesis that the expected expression
+ of a gene in two conditions identically follow a NB distribution."""
bioc = "sSeq"
- version('1.34.0', commit='882bea1664f55d85550a7185cbd4a0108c35df36')
- version('1.32.0', commit='c0d3c305755d888f64d334a4ab5fa54c623054cf')
- version('1.28.0', commit='401f6805628bdf6579cc0e643b7ed54319f024be')
- version('1.22.0', commit='fa3895c9578edddca17b5d13a2678ee5830b85cc')
- version('1.20.1', commit='91f31440323612cb04beb44404ab0a1bcb3ad87d')
- version('1.18.0', commit='1f65e5a55ce0d51672b785450031872e6db5ca0f')
- version('1.16.0', commit='b7f2b99dbd4a12ee9d18b0ec9898f13f1038479e')
- version('1.14.0', commit='20ccffeb60196914975aa1feef902ddba659c571')
+ version("1.34.0", commit="882bea1664f55d85550a7185cbd4a0108c35df36")
+ version("1.32.0", commit="c0d3c305755d888f64d334a4ab5fa54c623054cf")
+ version("1.28.0", commit="401f6805628bdf6579cc0e643b7ed54319f024be")
+ version("1.22.0", commit="fa3895c9578edddca17b5d13a2678ee5830b85cc")
+ version("1.20.1", commit="91f31440323612cb04beb44404ab0a1bcb3ad87d")
+ version("1.18.0", commit="1f65e5a55ce0d51672b785450031872e6db5ca0f")
+ version("1.16.0", commit="b7f2b99dbd4a12ee9d18b0ec9898f13f1038479e")
+ version("1.14.0", commit="20ccffeb60196914975aa1feef902ddba659c571")
- depends_on('r@3.0:', type=('build', 'run'))
- depends_on('r-catools', type=('build', 'run'))
- depends_on('r-rcolorbrewer', type=('build', 'run'))
+ depends_on("r@3.0:", type=("build", "run"))
+ depends_on("r-catools", type=("build", "run"))
+ depends_on("r-rcolorbrewer", type=("build", "run"))