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author | Todd Gamblin <tgamblin@llnl.gov> | 2022-07-30 15:19:18 -0700 |
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committer | Todd Gamblin <tgamblin@llnl.gov> | 2022-07-31 13:29:20 -0700 |
commit | f52f6e99dbf1131886a80112b8c79dfc414afb7c (patch) | |
tree | 05cb7d64b2395922f2f24683da49f472075be12c /var/spack/repos/builtin/packages/r-variantannotation/package.py | |
parent | 549ba1ed32372c67fc57271cde3797d58b7dec6e (diff) | |
download | spack-f52f6e99dbf1131886a80112b8c79dfc414afb7c.tar.gz spack-f52f6e99dbf1131886a80112b8c79dfc414afb7c.tar.bz2 spack-f52f6e99dbf1131886a80112b8c79dfc414afb7c.tar.xz spack-f52f6e99dbf1131886a80112b8c79dfc414afb7c.zip |
black: reformat entire repository with black
Diffstat (limited to 'var/spack/repos/builtin/packages/r-variantannotation/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/r-variantannotation/package.py | 102 |
1 files changed, 51 insertions, 51 deletions
diff --git a/var/spack/repos/builtin/packages/r-variantannotation/package.py b/var/spack/repos/builtin/packages/r-variantannotation/package.py index 5e0136c610..7e5e5ae6cf 100644 --- a/var/spack/repos/builtin/packages/r-variantannotation/package.py +++ b/var/spack/repos/builtin/packages/r-variantannotation/package.py @@ -9,60 +9,60 @@ from spack.package import * class RVariantannotation(RPackage): """Annotation of Genetic Variants. - Annotate variants, compute amino acid coding changes, predict coding - outcomes.""" + Annotate variants, compute amino acid coding changes, predict coding + outcomes.""" bioc = "VariantAnnotation" - version('1.42.1', commit='d1121696c76c189d6b4df9914806bf585a495845') - version('1.40.0', commit='50ead7cb60cedf3c053853fab92d9f104f9f85bd') - version('1.36.0', commit='9918bd19a2e6f89e5edc5fe03c8812f500bb3e19') - version('1.30.1', commit='fb1ab00872570afb280522c4663e347dafc07a9e') - version('1.28.13', commit='0393347b8ce2d5edf1a61589be93e6a93eda3419') - version('1.26.1', commit='60ae67598cc3d7ed20ee6417920f8c209085faaf') - version('1.24.5', commit='468d7f53fd743e04c9af853d58e871b4cc13a090') - version('1.22.3', commit='3a91b6d4297aa416d5f056dec6f8925eb1a8eaee') + version("1.42.1", commit="d1121696c76c189d6b4df9914806bf585a495845") + version("1.40.0", commit="50ead7cb60cedf3c053853fab92d9f104f9f85bd") + version("1.36.0", commit="9918bd19a2e6f89e5edc5fe03c8812f500bb3e19") + version("1.30.1", commit="fb1ab00872570afb280522c4663e347dafc07a9e") + version("1.28.13", commit="0393347b8ce2d5edf1a61589be93e6a93eda3419") + version("1.26.1", commit="60ae67598cc3d7ed20ee6417920f8c209085faaf") + version("1.24.5", commit="468d7f53fd743e04c9af853d58e871b4cc13a090") + version("1.22.3", commit="3a91b6d4297aa416d5f056dec6f8925eb1a8eaee") - depends_on('r@2.8.0:', type=('build', 'run')) - depends_on('r@4.0.0:', type=('build', 'run'), when='@1.40.0:') - depends_on('r-biocgenerics@0.15.3:', type=('build', 'run')) - depends_on('r-biocgenerics@0.37.0:', type=('build', 'run'), when='@1.40.0:') - depends_on('r-matrixgenerics', type=('build', 'run'), when='@1.36.0:') - depends_on('r-genomeinfodb@1.11.4:', type=('build', 'run')) - depends_on('r-genomeinfodb@1.15.2:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-genomicranges@1.27.6:', type=('build', 'run')) - depends_on('r-genomicranges@1.31.8:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-genomicranges@1.41.5:', type=('build', 'run'), when='@1.36.0:') - depends_on('r-summarizedexperiment@1.5.3:', type=('build', 'run')) - depends_on('r-summarizedexperiment@1.19.5:', type=('build', 'run'), when='@1.36.0:') - depends_on('r-rsamtools@1.23.10:', type=('build', 'run')) - depends_on('r-rsamtools@1.31.2:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-rsamtools@1.33.6:', type=('build', 'run'), when='@1.28.13:') - depends_on('r-rsamtools@1.99.0:', type=('build', 'run'), when='@1.30.1:') - depends_on('r-dbi', type=('build', 'run')) - depends_on('r-zlibbioc', type=('build', 'run')) - depends_on('r-biobase', type=('build', 'run')) - depends_on('r-s4vectors@0.13.13:', type=('build', 'run')) - depends_on('r-s4vectors@0.17.24:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-s4vectors@0.27.12:', type=('build', 'run'), when='@1.36.0:') - depends_on('r-iranges@2.3.25:', type=('build', 'run')) - depends_on('r-iranges@2.13.13:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-iranges@2.23.9:', type=('build', 'run'), when='@1.36.0:') - depends_on('r-xvector@0.5.6:', type=('build', 'run')) - depends_on('r-xvector@0.19.7:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-xvector@0.29.2:', type=('build', 'run'), when='@1.36.0:') - depends_on('r-biostrings@2.33.5:', type=('build', 'run')) - depends_on('r-biostrings@2.47.6:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-biostrings@2.57.2:', type=('build', 'run'), when='@1.36.0:') - depends_on('r-annotationdbi@1.27.9:', type=('build', 'run')) - depends_on('r-rtracklayer@1.25.16:', type=('build', 'run')) - depends_on('r-rtracklayer@1.39.7:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-bsgenome@1.37.6:', type=('build', 'run')) - depends_on('r-bsgenome@1.47.3:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-genomicfeatures@1.27.4:', type=('build', 'run')) - depends_on('r-genomicfeatures@1.31.3:', type=('build', 'run'), when='@1.26.1:') - depends_on('r-rhtslib', type=('build', 'run'), when='@1.30.1:') - depends_on('gmake', type='build') + depends_on("r@2.8.0:", type=("build", "run")) + depends_on("r@4.0.0:", type=("build", "run"), when="@1.40.0:") + depends_on("r-biocgenerics@0.15.3:", type=("build", "run")) + depends_on("r-biocgenerics@0.37.0:", type=("build", "run"), when="@1.40.0:") + depends_on("r-matrixgenerics", type=("build", "run"), when="@1.36.0:") + depends_on("r-genomeinfodb@1.11.4:", type=("build", "run")) + depends_on("r-genomeinfodb@1.15.2:", type=("build", "run"), when="@1.26.1:") + depends_on("r-genomicranges@1.27.6:", type=("build", "run")) + depends_on("r-genomicranges@1.31.8:", type=("build", "run"), when="@1.26.1:") + depends_on("r-genomicranges@1.41.5:", type=("build", "run"), when="@1.36.0:") + depends_on("r-summarizedexperiment@1.5.3:", type=("build", "run")) + depends_on("r-summarizedexperiment@1.19.5:", type=("build", "run"), when="@1.36.0:") + depends_on("r-rsamtools@1.23.10:", type=("build", "run")) + depends_on("r-rsamtools@1.31.2:", type=("build", "run"), when="@1.26.1:") + depends_on("r-rsamtools@1.33.6:", type=("build", "run"), when="@1.28.13:") + depends_on("r-rsamtools@1.99.0:", type=("build", "run"), when="@1.30.1:") + depends_on("r-dbi", type=("build", "run")) + depends_on("r-zlibbioc", type=("build", "run")) + depends_on("r-biobase", type=("build", "run")) + depends_on("r-s4vectors@0.13.13:", type=("build", "run")) + depends_on("r-s4vectors@0.17.24:", type=("build", "run"), when="@1.26.1:") + depends_on("r-s4vectors@0.27.12:", type=("build", "run"), when="@1.36.0:") + depends_on("r-iranges@2.3.25:", type=("build", "run")) + depends_on("r-iranges@2.13.13:", type=("build", "run"), when="@1.26.1:") + depends_on("r-iranges@2.23.9:", type=("build", "run"), when="@1.36.0:") + depends_on("r-xvector@0.5.6:", type=("build", "run")) + depends_on("r-xvector@0.19.7:", type=("build", "run"), when="@1.26.1:") + depends_on("r-xvector@0.29.2:", type=("build", "run"), when="@1.36.0:") + depends_on("r-biostrings@2.33.5:", type=("build", "run")) + depends_on("r-biostrings@2.47.6:", type=("build", "run"), when="@1.26.1:") + depends_on("r-biostrings@2.57.2:", type=("build", "run"), when="@1.36.0:") + depends_on("r-annotationdbi@1.27.9:", type=("build", "run")) + depends_on("r-rtracklayer@1.25.16:", type=("build", "run")) + depends_on("r-rtracklayer@1.39.7:", type=("build", "run"), when="@1.26.1:") + depends_on("r-bsgenome@1.37.6:", type=("build", "run")) + depends_on("r-bsgenome@1.47.3:", type=("build", "run"), when="@1.26.1:") + depends_on("r-genomicfeatures@1.27.4:", type=("build", "run")) + depends_on("r-genomicfeatures@1.31.3:", type=("build", "run"), when="@1.26.1:") + depends_on("r-rhtslib", type=("build", "run"), when="@1.30.1:") + depends_on("gmake", type="build") # Not listed but needed - depends_on('curl') + depends_on("curl") |