gmap-gsnap: adding gmap-gsnap package (#4570)

1 files changed, 36 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/gmap-gsnap/package.py b/var/spack/repos/builtin/packages/gmap-gsnap/package.py
new file mode 100644
index 0000000000..e2c79848a0
--- /dev/null
+++ b/var/spack/repos/builtin/packages/gmap-gsnap/package.py
@@ -0,0 +1,36 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class GmapGsnap(AutotoolsPackage):
+    """GMAP: A Genomic Mapping and Alignment Program for
+       mRNA and EST Sequences, and GSNAP: Genomic Short-read
+       Nucleotide Alignment Program"""
+
+    homepage = "http://research-pub.gene.com/gmap/"
+    url      = "http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-06-16.tar.gz"
+
+    version('2017-06-16', 'fcc91b8bdd4bf12ae3124de0c00db0c0')