Added the latest versions of a few packages (#7910)

* automake: added version 1.16.1

* lmod: added version 7.7.29

* git: added version 2.17.0

* tmux: added version 2.7

* scala: added version 2.12.5, fixed typo in version 2.10.6

* Added spark@2.3.0, hadoop@3.1.0, jdk@8u172-b11

* picard: added version 2.18.3

* tar: added version 1.30

10 files changed, 21 insertions, 2 deletions

diff --git a/var/spack/repos/builtin/packages/automake/package.py b/var/spack/repos/builtin/packages/automake/package.py
index 8121626f5c..e25a3264a0 100644
--- a/var/spack/repos/builtin/packages/automake/package.py
+++ b/var/spack/repos/builtin/packages/automake/package.py
@@ -31,6 +31,7 @@ class Automake(AutotoolsPackage):
     homepage = 'http://www.gnu.org/software/automake/'
     url      = 'http://ftp.gnu.org/gnu/automake/automake-1.15.tar.gz'
 
+    version('1.16.1', '83cc2463a4080efd46a72ba2c9f6b8f5')
     version('1.15.1', '95df3f2d6eb8f81e70b8cb63a93c8853')
     version('1.15',   '716946a105ca228ab545fc37a70df3a3')
     version('1.14.1', 'd052a3e884631b9c7892f2efce542d75')
@@ -43,10 +44,14 @@ class Automake(AutotoolsPackage):
 
     def patch(self):
         # The full perl shebang might be too long
+        files_to_be_patched_fmt = 'bin/{0}.in'
+        if '@:1.15.1' in self.spec:
+            files_to_be_patched_fmt = 't/wrap/{0}.in'
+
         for file in ('aclocal', 'automake'):
             filter_file('^#!@PERL@ -w',
                         '#!/usr/bin/env perl',
-                        't/wrap/{0}.in'.format(file))
+                        files_to_be_patched_fmt.format(file))
 
     def _make_executable(self, name):
         return Executable(join_path(self.prefix.bin, name))
diff --git a/var/spack/repos/builtin/packages/git/package.py b/var/spack/repos/builtin/packages/git/package.py
index a31d7034d8..be4bc12e66 100644
--- a/var/spack/repos/builtin/packages/git/package.py
+++ b/var/spack/repos/builtin/packages/git/package.py
@@ -44,6 +44,11 @@ class Git(AutotoolsPackage):
 
     releases = [
         {
+            'version': '2.17.0',
+            'md5': '8e0f5253eef3abeb76bd9c55386d3bee',
+            'md5_manpages': '1ce1ae78a559032810af8b455535935f'
+        },
+        {
             'version': '2.15.1',
             'md5': 'da59fc6baa55ab44684011e369af397d',
             'md5_manpages': '2cb428071c08c7df513cfc103610536e',
diff --git a/var/spack/repos/builtin/packages/hadoop/package.py b/var/spack/repos/builtin/packages/hadoop/package.py
index 29fead0755..013f1ebcbf 100644
--- a/var/spack/repos/builtin/packages/hadoop/package.py
+++ b/var/spack/repos/builtin/packages/hadoop/package.py
@@ -34,6 +34,7 @@ class Hadoop(Package):
     homepage = "http://hadoop.apache.org/"
     url      = "http://mirrors.ocf.berkeley.edu/apache/hadoop/common/hadoop-2.9.0/hadoop-2.9.0.tar.gz"
 
+    version('3.1.0', 'f036ebd3fa0ef66ee1819e351d15b6cb')
     version('2.9.0', 'b443ead81aa2bd5086f99e62e66a8f64')
 
     depends_on('java', type='run')
diff --git a/var/spack/repos/builtin/packages/jdk/package.py b/var/spack/repos/builtin/packages/jdk/package.py
index d377b67ee5..b39c32bc07 100644
--- a/var/spack/repos/builtin/packages/jdk/package.py
+++ b/var/spack/repos/builtin/packages/jdk/package.py
@@ -48,6 +48,8 @@ class Jdk(Package):
     # For instructions on how to find the magic URL, see:
     # https://gist.github.com/P7h/9741922
     # https://linuxconfig.org/how-to-install-java-se-development-kit-on-debian-linux
+    version('8u172-b11', 'eda2945e8c02b84adbf78f46c37b71c1', curl_options=curl_options,
+            url='http://download.oracle.com/otn-pub/java/jdk/8u172-b11/a58eab1ec242421181065cdc37240b08/jdk-8u172-linux-x64.tar.gz')
     version('8u141-b15', '8cf4c4e00744bfafc023d770cb65328c', curl_options=curl_options,
             url='http://download.oracle.com/otn-pub/java/jdk/8u141-b15/336fa29ff2bb4ef291e347e091f7f4a7/jdk-8u141-linux-x64.tar.gz')
     version('8u131-b11', '75b2cb2249710d822a60f83e28860053', curl_options=curl_options,
diff --git a/var/spack/repos/builtin/packages/lmod/package.py b/var/spack/repos/builtin/packages/lmod/package.py
index ab7edf0db6..98a62466b8 100644
--- a/var/spack/repos/builtin/packages/lmod/package.py
+++ b/var/spack/repos/builtin/packages/lmod/package.py
@@ -38,6 +38,7 @@ class Lmod(AutotoolsPackage):
     homepage = 'https://www.tacc.utexas.edu/research-development/tacc-projects/lmod'
     url      = 'https://github.com/TACC/Lmod/archive/7.4.11.tar.gz'
 
+    version('7.7.29', 'bd3f171995e6863505e8a958d158ced1')
     version('7.7.13', 'e1d222fa04148707dceb08c82d7e9fa5')
     version('7.7',    '8ac594401716c6d1b40cac22bc1030ca')
     version('7.6.14', '60726c991038b6337fbb27b6a333a2d4')
diff --git a/var/spack/repos/builtin/packages/picard/package.py b/var/spack/repos/builtin/packages/picard/package.py
index b82f98eeee..e4dc41a4ea 100644
--- a/var/spack/repos/builtin/packages/picard/package.py
+++ b/var/spack/repos/builtin/packages/picard/package.py
@@ -41,6 +41,7 @@ class Picard(Package):
 
     # They started distributing a single jar file at v2.6.0, prior to
     # that it was a .zip file with multiple .jar and .so files
+    version('2.18.3', '181b1b0731fd35f0d8bd44677d8787e9')
     version('2.18.0', '20045ff141e4a67512365f0b6bbd8229', expand=False)
     version('2.17.0', '72cc527f1e4ca6a799ae0117af60b54e', expand=False)
     version('2.16.0', 'fed8928b03bb36e355656f349e579083', expand=False)
diff --git a/var/spack/repos/builtin/packages/scala/package.py b/var/spack/repos/builtin/packages/scala/package.py
index 1fda2f239f..3a036d99f8 100644
--- a/var/spack/repos/builtin/packages/scala/package.py
+++ b/var/spack/repos/builtin/packages/scala/package.py
@@ -36,9 +36,10 @@ class Scala(Package):
     homepage = "https://www.scala-lang.org/"
     url = "https://downloads.lightbend.com/scala/2.12.1/scala-2.12.1.tgz"
 
+    version('2.12.5', '25cf4989d061c585bd0a3fa357ccf0a6')
     version('2.12.1', '3eaecbce019b0fa3067503846e292b32')
     version('2.11.11', '3f5b76001f60cbc31111ddb81de5ea07')
-    version('2.20.6', 'd79dc9fdc627b73289306bdaec81ca98')
+    version('2.10.6', 'd79dc9fdc627b73289306bdaec81ca98')
 
     depends_on('java')
 
diff --git a/var/spack/repos/builtin/packages/spark/package.py b/var/spack/repos/builtin/packages/spark/package.py
index 4c436d1342..7cdd6b175f 100644
--- a/var/spack/repos/builtin/packages/spark/package.py
+++ b/var/spack/repos/builtin/packages/spark/package.py
@@ -42,6 +42,7 @@ class Spark(Package):
     depends_on('java', type=('build', 'run'))
     depends_on('hadoop', when='+hadoop', type=('build', 'run'))
 
+    version('2.3.0', 'db21021b8e877b219ab886097ef42344')
     version('2.1.0', '21d4471e78250775b1fa7c0e6c3a1326')
     version('2.0.2', '32110c1bb8f081359738742bd26bced1')
     version('2.0.0', '8a5307d973da6949a385aefb6ff747bb')
diff --git a/var/spack/repos/builtin/packages/tar/package.py b/var/spack/repos/builtin/packages/tar/package.py
index 9e25ea7a4c..af78a051bd 100644
--- a/var/spack/repos/builtin/packages/tar/package.py
+++ b/var/spack/repos/builtin/packages/tar/package.py
@@ -32,6 +32,7 @@ class Tar(AutotoolsPackage):
     homepage = "https://www.gnu.org/software/tar/"
     url = "https://ftp.gnu.org/gnu/tar/tar-1.29.tar.gz"
 
+    version('1.30', 'e0c5ed59e4dd33d765d6c90caadd3c73')
     version('1.29', 'cae466e6e58c7292355e7080248f244db3a4cf755f33f4fa25ca7f9a7ed09af0')
     version('1.28', '6ea3dbea1f2b0409b234048e021a9fd7')
 
diff --git a/var/spack/repos/builtin/packages/tmux/package.py b/var/spack/repos/builtin/packages/tmux/package.py
index 26599a7cd5..324705e810 100644
--- a/var/spack/repos/builtin/packages/tmux/package.py
+++ b/var/spack/repos/builtin/packages/tmux/package.py
@@ -36,6 +36,7 @@ class Tmux(AutotoolsPackage):
     homepage = "http://tmux.github.io"
     url = "https://github.com/tmux/tmux/releases/download/2.6/tmux-2.6.tar.gz"
 
+    version('2.7', 'bcdfcf910c94c3e02ce6b1c035880306')
     version('2.6', 'd541ff392249f94c4f3635793556f827')
     version('2.5', '4a5d73d96d8f11b0bdf9b6f15ab76d15')
     version('2.4', '6165d3aca811a3225ef8afbd1afcf1c5')