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| author | Jen Herting <jen@herting.cc> | 2022-10-07 17:32:43 -0400 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-10-07 15:32:43 -0600 |
| commit | 5560bbf97efde83343cfc0d4ff28840db7db77e6 (patch) | |
| tree | 4cbe086b49f68c2e35d4735662ea68926ca8298a /var | |
| parent | b3cfcebf94611424dc503dd0fab3d0a84a68920b (diff) | |
| download | spack-5560bbf97efde83343cfc0d4ff28840db7db77e6.tar.gz spack-5560bbf97efde83343cfc0d4ff28840db7db77e6.tar.bz2 spack-5560bbf97efde83343cfc0d4ff28840db7db77e6.tar.xz spack-5560bbf97efde83343cfc0d4ff28840db7db77e6.zip | |
New package: py-pathml (#32566)
* [py-pathml Farber] Created package
* [pathml Farber] Dependencies added
* [py-pathml] Corrected dependency
* [py-pathml] Added types
* [py-pathml] depends on py-h5py
* [py-pathml] py-opencv-contrib-python -> opencv+python3+contrib
* [py-pathml] added spack import and fixed setuptools type
* [py-pathml] update import
* [py-pathml] opencv no longer has +contrib
* [@spackbot] updating style on behalf of qwertos
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-pathml/package.py | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-pathml/package.py b/var/spack/repos/builtin/packages/py-pathml/package.py new file mode 100644 index 0000000000..9e1fa11a5f --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pathml/package.py @@ -0,0 +1,34 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyPathml(PythonPackage): + """An open-source toolkit for computational pathology and machine learning.""" + + homepage = "https://github.com/Dana-Farber-AIOS/pathml" + pypi = "pathml/pathml-2.1.0.tar.gz" + + version("2.1.0", sha256="462bb2f16452dddad310c30f62678a1336ce492263355fd6722c07ee4840ea6a") + + depends_on("py-setuptools@42:", type="build") + depends_on("py-numpy@1.16.4:", type=("build", "run")) + depends_on("py-pandas", type=("build", "run")) + depends_on("py-scipy", type=("build", "run")) + depends_on("py-pydicom", type=("build", "run")) + depends_on("py-statsmodels", type=("build", "run")) + depends_on("py-openslide-python", type=("build", "run")) + depends_on("py-matplotlib", type=("build", "run")) + depends_on("py-scikit-image", type=("build", "run")) + depends_on("py-scikit-learn", type=("build", "run")) + depends_on("py-dask +distributed", type=("build", "run")) + depends_on("py-anndata@0.7.6:", type=("build", "run")) + depends_on("py-scanpy", type=("build", "run")) + depends_on("py-torch", type=("build", "run")) + depends_on("opencv+python3", type=("build", "run")) + depends_on("py-python-bioformats@4.0.0:", type=("build", "run")) + depends_on("py-loguru", type=("build", "run")) + depends_on("py-h5py", type=("build", "run")) |