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| author | Luke Diorio-Toth <ldioriototh@gmail.com> | 2022-10-21 14:54:23 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-10-21 13:54:23 -0600 |
| commit | 6fdb8b268247af7254ff45136e54cc7950b662b1 (patch) | |
| tree | c8179543092b1bbbef7711bbf89f0d3cb14eb2e8 /var | |
| parent | b1836a7c50c1e98808cf0820d1f0d855e9c201cf (diff) | |
| download | spack-6fdb8b268247af7254ff45136e54cc7950b662b1.tar.gz spack-6fdb8b268247af7254ff45136e54cc7950b662b1.tar.bz2 spack-6fdb8b268247af7254ff45136e54cc7950b662b1.tar.xz spack-6fdb8b268247af7254ff45136e54cc7950b662b1.zip | |
py-instrain: added required + optional dependency (#33465)
* added py-instrain dependencies
* fixed style
* removed coverm dep until I have a working coverm package
* added dep documentation
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-instrain/package.py | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-instrain/package.py b/var/spack/repos/builtin/packages/py-instrain/package.py index 90887508fe..962ee78f7a 100644 --- a/var/spack/repos/builtin/packages/py-instrain/package.py +++ b/var/spack/repos/builtin/packages/py-instrain/package.py @@ -17,6 +17,8 @@ class PyInstrain(PythonPackage): homepage = "https://github.com/MrOlm/instrain" pypi = "inStrain/inStrain-1.5.7.tar.gz" + variant("prodigal", default=False, description="Enables profiling on a gene by gene level") + version("1.5.7", sha256="c5dcb01dae244927fe987b5f0695d895ccf521c9dfd87a2cb59057ad50bd9bfa") depends_on("python@3.4.0:", type=("build", "run")) @@ -35,3 +37,9 @@ class PyInstrain(PythonPackage): depends_on("py-psutil", type=("build", "run")) depends_on("py-lmfit", type=("build", "run")) depends_on("py-numba", type=("build", "run")) + # non-python dependencies + # https://instrain.readthedocs.io/en/latest/installation.html#dependencies + # Essential dependencies + depends_on("samtools", type=("build", "run")) + # Optional dependencies + depends_on("prodigal", type=("build", "run"), when="+prodigal") |