new package: racon (bioinformatics) (#7726)

* new package: racon (bioinformatics)

* add cmake_arg method

1 files changed, 51 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/racon/package.py b/var/spack/repos/builtin/packages/racon/package.py
new file mode 100644
index 0000000000..2ea3730087
--- /dev/null
+++ b/var/spack/repos/builtin/packages/racon/package.py
@@ -0,0 +1,51 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class Racon(CMakePackage):
+    """Ultrafast consensus module for raw de novo genome assembly of long
+     uncorrected reads."""
+
+    homepage = "https://github.com/isovic/racon"
+    url      = "https://github.com/isovic/racon/releases/download/1.2.1/racon-v1.2.1.tar.gz"
+
+    version('1.3.0', 'e00d61f391bce2af20ebd2a3aee1e05a')
+    version('1.2.1', '7bf273b965a5bd0f41342a9ffe5c7639')
+
+    depends_on('cmake@3.2:', type='build')
+    depends_on('python', type='build')
+
+    conflicts('%gcc@:4.7')
+    conflicts('%clang@:3.1')
+
+    def cmake_args(self):
+        args = ['-Dracon_build_wrapper=ON']
+        return args
+
+    def install(self, spec, prefix):
+        install_tree('spack-build/bin', prefix.bin)
+        install_tree('spack-build/lib', prefix.lib)